HL_7PHC_041

3D structure

PDB id

7PHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GAGAGGAUC

Length

9 nucleotides

Bulged bases

7PHC|1|3|G|1668

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PHC_041 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.444

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7PHC|1|3|G|1663
7PHC|1|3|A|1664
7PHC|1|3|G|1665
7PHC|1|3|A|1666
7PHC|1|3|G|1667
7PHC|1|3|G|1668
7PHC|1|3|A|1669
7PHC|1|3|U|1670
7PHC|1|3|C|1671

Current chains

Chain 3

23S ribosomal RNA

Nearby chains