HL_7PHC_066

3D structure

PDB id

7PHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

AAAGACGAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PHC_066 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.2536

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7PHC|1|3|A|2823
7PHC|1|3|A|2824
7PHC|1|3|A|2825
7PHC|1|3|G|2826
7PHC|1|3|A|2827
7PHC|1|3|C|2828
7PHC|1|3|G|2829
7PHC|1|3|A|2830
7PHC|1|3|U|2831

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L3

Chain m

50S ribosomal protein L17

Chain y

50S ribosomal protein L32