HL_7PHC_073

3D structure

PDB id

7PHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GGUUCGAAUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PHC_073 not in the Motif Atlas

Geometric match to HL_8G9Z_001

Geometric discrepancy: 0.3322

The information below is about HL_8G9Z_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7PHC|1|5|G|176
7PHC|1|5|G|177
7PHC|1|5|U|178
7PHC|1|5|U|179
7PHC|1|5|C|180
7PHC|1|5|G|185
7PHC|1|5|A|186
7PHC|1|5|A|187
7PHC|1|5|U|188
7PHC|1|5|C|189

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S17