HL_7PIA_011

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

GUGAUAGCC

Length

9 nucleotides

Bulged bases

7PIA|1|3|G|363, 7PIA|1|3|A|364, 7PIA|1|3|U|365

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIA_011 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.3004

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

7PIA|1|3|G|361
7PIA|1|3|U|362
7PIA|1|3|G|363
7PIA|1|3|A|364
7PIA|1|3|U|365
7PIA|1|3|A|366
7PIA|1|3|G|367
7PIA|1|3|C|368
7PIA|1|3|C|369

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L4

Chain t

50S ribosomal protein L24