7PIA Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7PIA_107 | No text annotation | ||
| HL_7PIA_001 | No text annotation | ||
| HL_7PIA_002 | No text annotation | ||
| HL_7PIA_003 | No text annotation | ||
| HL_7PIA_119 | No text annotation | ||
| HL_7PIA_004 | GNRA related | ||
| HL_7PIA_005 | No text annotation | ||
| HL_7PIA_006 | No text annotation | ||
| HL_7PIA_007 | No text annotation | ||
| HL_7PIA_008 | No text annotation | ||
| HL_7PIA_009 | No text annotation | ||
| HL_7PIA_010 | No text annotation | ||
| HL_7PIA_108 | T-loop with 1 bulged base | ||
| HL_7PIA_109 | No text annotation | ||
| HL_7PIA_011 | Mini UNCG | ||
| HL_7PIA_012 | No text annotation | ||
| HL_7PIA_013 | No text annotation | ||
| HL_7PIA_110 | Pseudoknot geometry | ||
| HL_7PIA_014 | GNRA | ||
| HL_7PIA_015 | GNRA | ||
| HL_7PIA_016 | No text annotation | ||
| HL_7PIA_017 | T-loop with 2 stacked bulged bases | ||
| HL_7PIA_018 | GNRA | ||
| HL_7PIA_019 | GNRA | ||
| HL_7PIA_111 | No text annotation | ||
| HL_7PIA_020 | No text annotation | ||
| HL_7PIA_021 | No text annotation | ||
| HL_7PIA_022 | No text annotation | ||
| HL_7PIA_023 | No text annotation | ||
| HL_7PIA_024 | No text annotation | ||
| HL_7PIA_120 | No text annotation | ||
| HL_7PIA_025 | No text annotation | ||
| HL_7PIA_026 | GNRA | ||
| HL_7PIA_027 | No text annotation | ||
| HL_7PIA_028 | No text annotation | ||
| HL_7PIA_029 | GNRA wlth tandem sheared | ||
| HL_7PIA_030 | No text annotation | ||
| HL_7PIA_031 | No text annotation | ||
| HL_7PIA_032 | T-loop with 2 stacked bulged bases | ||
| HL_7PIA_033 | Pseudoknot geometry with 3' bulge | ||
| HL_7PIA_034 | UNCG variation | ||
| HL_7PIA_035 | No text annotation | ||
| HL_7PIA_036 | No text annotation | ||
| HL_7PIA_112 | No text annotation | ||
| HL_7PIA_037 | No text annotation | ||
| HL_7PIA_038 | No text annotation | ||
| HL_7PIA_039 | Mini UNCG | ||
| HL_7PIA_040 | No text annotation | ||
| HL_7PIA_041 | GNRA | ||
| HL_7PIA_042 | Mini UNCG | ||
| HL_7PIA_113 | No text annotation | ||
| HL_7PIA_043 | No text annotation | ||
| HL_7PIA_044 | No text annotation | ||
| HL_7PIA_045 | No text annotation | ||
| HL_7PIA_046 | GNRA related | ||
| HL_7PIA_047 | GNRA | ||
| HL_7PIA_048 | UNCG variation | ||
| HL_7PIA_049 | No text annotation | ||
| HL_7PIA_114 | No text annotation | ||
| HL_7PIA_050 | No text annotation | ||
| HL_7PIA_051 | No text annotation | ||
| HL_7PIA_052 | No text annotation | ||
| HL_7PIA_053 | No text annotation | ||
| HL_7PIA_054 | No text annotation | ||
| HL_7PIA_055 | No text annotation | ||
| HL_7PIA_056 | GNRA with extra cWW | ||
| HL_7PIA_057 | GNRA | ||
| HL_7PIA_058 | tRNA anticodon loop | ||
| HL_7PIA_115 | No text annotation | ||
| HL_7PIA_059 | No text annotation | ||
| HL_7PIA_060 | Mini UNCG | ||
| HL_7PIA_061 | GNRA | ||
| HL_7PIA_062 | No text annotation | ||
| HL_7PIA_063 | GNRA related | ||
| HL_7PIA_064 | Ribsomal LSU H95 | ||
| HL_7PIA_065 | No text annotation | ||
| HL_7PIA_066 | No text annotation | ||
| HL_7PIA_067 | GNRA | ||
| HL_7PIA_116 | No text annotation | ||
| HL_7PIA_068 | No text annotation | ||
| HL_7PIA_069 | No text annotation | ||
| HL_7PIA_070 | No text annotation | ||
| HL_7PIA_071 | GNRA | ||
| HL_7PIA_072 | No text annotation | ||
| HL_7PIA_073 | No text annotation | ||
| HL_7PIA_074 | GNRA | ||
| HL_7PIA_075 | No text annotation | ||
| HL_7PIA_121 | GNRA related | ||
| HL_7PIA_076 | GNRA | ||
| HL_7PIA_117 | No text annotation | ||
| HL_7PIA_077 | No text annotation | ||
| HL_7PIA_078 | UNCG | ||
| HL_7PIA_079 | GNRA variation | ||
| HL_7PIA_080 | No text annotation | ||
| HL_7PIA_081 | No text annotation | ||
| HL_7PIA_082 | UNCG variation | ||
| HL_7PIA_083 | GNRA-like with tWH | ||
| HL_7PIA_084 | No text annotation | ||
| HL_7PIA_085 | GNRA | ||
| HL_7PIA_086 | No text annotation | ||
| HL_7PIA_087 | No text annotation | ||
| HL_7PIA_118 | No text annotation | ||
| HL_7PIA_088 | GNRA | ||
| HL_7PIA_089 | GNRA | ||
| HL_7PIA_090 | No text annotation | ||
| HL_7PIA_091 | GNRA | ||
| HL_7PIA_092 | GNRA | ||
| HL_7PIA_093 | T-loop related | ||
| HL_7PIA_094 | No text annotation | ||
| HL_7PIA_095 | GNRA | ||
| HL_7PIA_096 | GNRA | ||
| HL_7PIA_097 | T-loop with 3 stacked bulged bases | ||
| HL_7PIA_098 | No text annotation | ||
| HL_7PIA_099 | Mini UNCG | ||
| HL_7PIA_100 | GNRA | ||
| HL_7PIA_101 | No text annotation | ||
| HL_7PIA_102 | No text annotation | ||
| HL_7PIA_103 | T-loop with 2 stacked bulged bases | ||
| HL_7PIA_104 | No text annotation | ||
| HL_7PIA_105 | No text annotation | ||
| HL_7PIA_106 | T-loop with 2 stacked bulged bases |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7PIA_001 | No text annotation | ||
| IL_7PIA_181 | No text annotation | ||
| IL_7PIA_002 | No text annotation | ||
| IL_7PIA_003 | Single bulged A | ||
| IL_7PIA_004 | Single stack bend | ||
| IL_7PIA_005 | No text annotation | ||
| IL_7PIA_006 | Single stack bend | ||
| IL_7PIA_007 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_7PIA_008 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_7PIA_009 | No text annotation | ||
| IL_7PIA_215 | Major groove platform | ||
| IL_7PIA_010 | No text annotation | ||
| IL_7PIA_011 | No text annotation | ||
| IL_7PIA_012 | No text annotation | ||
| IL_7PIA_013 | No text annotation | ||
| IL_7PIA_182 | Double sheared | ||
| IL_7PIA_014 | Triple sheared | ||
| IL_7PIA_015 | Isolated non-canonical cWW pair | ||
| IL_7PIA_016 | No text annotation | ||
| IL_7PIA_017 | Isolated non-canonical cWW pair | ||
| IL_7PIA_018 | No text annotation | ||
| IL_7PIA_019 | Single bulged A | ||
| IL_7PIA_020 | No text annotation | ||
| IL_7PIA_021 | Isolated non-canonical cWW pair | ||
| IL_7PIA_022 | Single stack bend | ||
| IL_7PIA_023 | Major groove platform | ||
| IL_7PIA_024 | Isolated non-canonical cWW pair | ||
| IL_7PIA_025 | Multiple bulged bases | ||
| IL_7PIA_183 | Tandem non-canonical cWW pairs | ||
| IL_7PIA_216 | No text annotation | ||
| IL_7PIA_026 | No text annotation | ||
| IL_7PIA_184 | No text annotation | ||
| IL_7PIA_027 | No text annotation | ||
| IL_7PIA_185 | No text annotation | ||
| IL_7PIA_028 | Minor groove platform | ||
| IL_7PIA_186 | No text annotation | ||
| IL_7PIA_029 | No text annotation | ||
| IL_7PIA_217 | C-loop | ||
| IL_7PIA_030 | No text annotation | ||
| IL_7PIA_031 | No text annotation | ||
| IL_7PIA_032 | No text annotation | ||
| IL_7PIA_033 | Single bulged C | ||
| IL_7PIA_034 | UAA/GAN | ||
| IL_7PIA_035 | Multiple bulged bases | ||
| IL_7PIA_036 | Kink-turn related | ||
| IL_7PIA_037 | No text annotation | ||
| IL_7PIA_038 | Isolated near basepair | ||
| IL_7PIA_187 | No text annotation | ||
| IL_7PIA_218 | No text annotation | ||
| IL_7PIA_039 | No text annotation | ||
| IL_7PIA_040 | Major groove platform with extra cWW | ||
| IL_7PIA_041 | No text annotation | ||
| IL_7PIA_188 | No text annotation | ||
| IL_7PIA_219 | No text annotation | ||
| IL_7PIA_042 | No text annotation | ||
| IL_7PIA_189 | Single stack bend | ||
| IL_7PIA_043 | Isolated cWH basepair | ||
| IL_7PIA_220 | Major groove platform; stack outside cWW | ||
| IL_7PIA_044 | C-loop | ||
| IL_7PIA_190 | No text annotation | ||
| IL_7PIA_045 | No text annotation | ||
| IL_7PIA_046 | No text annotation | ||
| IL_7PIA_047 | tSH-tHW-tHS | ||
| IL_7PIA_048 | No text annotation | ||
| IL_7PIA_191 | No text annotation | ||
| IL_7PIA_049 | Tandem non-canonical cWW pairs | ||
| IL_7PIA_221 | No text annotation | ||
| IL_7PIA_050 | No text annotation | ||
| IL_7PIA_222 | No text annotation | ||
| IL_7PIA_051 | No text annotation | ||
| IL_7PIA_052 | No text annotation | ||
| IL_7PIA_053 | No text annotation | ||
| IL_7PIA_054 | No text annotation | ||
| IL_7PIA_223 | No text annotation | ||
| IL_7PIA_055 | UAA/GAN variation | ||
| IL_7PIA_056 | No text annotation | ||
| IL_7PIA_224 | No text annotation | ||
| IL_7PIA_057 | Isolated tWW turn | ||
| IL_7PIA_058 | Major groove platform; stack outside cWW | ||
| IL_7PIA_059 | No text annotation | ||
| IL_7PIA_060 | Single stack bend | ||
| IL_7PIA_061 | tSH-tSH-tHH-tHS | ||
| IL_7PIA_062 | Isolated cWS basepair | ||
| IL_7PIA_063 | Single bulged A | ||
| IL_7PIA_064 | Kink-turn related | ||
| IL_7PIA_065 | No text annotation | ||
| IL_7PIA_192 | No text annotation | ||
| IL_7PIA_066 | No text annotation | ||
| IL_7PIA_225 | No text annotation | ||
| IL_7PIA_067 | Major groove minor groove platform; mini C-loop | ||
| IL_7PIA_193 | No text annotation | ||
| IL_7PIA_068 | Single stack bend | ||
| IL_7PIA_069 | Double sheared | ||
| IL_7PIA_070 | No text annotation | ||
| IL_7PIA_071 | Isolated non-canonical cWW pair | ||
| IL_7PIA_194 | Single stack bend | ||
| IL_7PIA_072 | Major groove platform with extra pair | ||
| IL_7PIA_195 | No text annotation | ||
| IL_7PIA_073 | No text annotation | ||
| IL_7PIA_074 | Single bulged U | ||
| IL_7PIA_075 | Minor groove platform | ||
| IL_7PIA_196 | Isolated tHS basepair with bulges | ||
| IL_7PIA_076 | No text annotation | ||
| IL_7PIA_197 | Tandem non-canonical cWW pairs | ||
| IL_7PIA_077 | Isolated non-canonical cWW pair | ||
| IL_7PIA_078 | Single stack bend | ||
| IL_7PIA_079 | Single stack bend | ||
| IL_7PIA_080 | No text annotation | ||
| IL_7PIA_198 | No text annotation | ||
| IL_7PIA_081 | Isolated non-canonical cWW pair | ||
| IL_7PIA_082 | No text annotation | ||
| IL_7PIA_083 | No text annotation | ||
| IL_7PIA_084 | No text annotation | ||
| IL_7PIA_085 | Isolated non-canonical cWW pair | ||
| IL_7PIA_086 | No text annotation | ||
| IL_7PIA_087 | No text annotation | ||
| IL_7PIA_199 | No text annotation | ||
| IL_7PIA_200 | No text annotation | ||
| IL_7PIA_088 | No text annotation | ||
| IL_7PIA_089 | Double sheared | ||
| IL_7PIA_090 | No text annotation | ||
| IL_7PIA_091 | Major groove platform | ||
| IL_7PIA_092 | Major groove platform with extra pair | ||
| IL_7PIA_226 | Major groove platform | ||
| IL_7PIA_093 | Major groove minor groove platform with extra cWW | ||
| IL_7PIA_094 | Double sheared with non-canonical cWW | ||
| IL_7PIA_095 | Major groove platform | ||
| IL_7PIA_096 | Isolated tHS basepair with bulges | ||
| IL_7PIA_097 | No text annotation | ||
| IL_7PIA_098 | No text annotation | ||
| IL_7PIA_227 | Major groove platform with intercalation | ||
| IL_7PIA_099 | Single bulged A | ||
| IL_7PIA_100 | No text annotation | ||
| IL_7PIA_101 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_7PIA_102 | No text annotation | ||
| IL_7PIA_228 | C-loop | ||
| IL_7PIA_103 | UAA/GAN related, with intercalation | ||
| IL_7PIA_104 | Multiple bulged bases | ||
| IL_7PIA_105 | No text annotation | ||
| IL_7PIA_106 | No text annotation | ||
| IL_7PIA_201 | No text annotation | ||
| IL_7PIA_107 | No text annotation | ||
| IL_7PIA_108 | Major groove intercalation | ||
| IL_7PIA_202 | No text annotation | ||
| IL_7PIA_109 | Multiple bulged bases with non-canonical cWW | ||
| IL_7PIA_110 | No text annotation | ||
| IL_7PIA_203 | tHS double platform | ||
| IL_7PIA_229 | Major groove intercalation | ||
| IL_7PIA_111 | No text annotation | ||
| IL_7PIA_112 | No text annotation | ||
| IL_7PIA_113 | Symmetric double minor groove platform | ||
| IL_7PIA_114 | No text annotation | ||
| IL_7PIA_115 | tSH-tHW-tHS-cWW | ||
| IL_7PIA_230 | Tandem non-canonical cWW pairs | ||
| IL_7PIA_204 | No text annotation | ||
| IL_7PIA_116 | No text annotation | ||
| IL_7PIA_117 | Minor groove platform | ||
| IL_7PIA_118 | Multiple bulged bases | ||
| IL_7PIA_231 | No text annotation | ||
| IL_7PIA_119 | No text annotation | ||
| IL_7PIA_120 | No text annotation | ||
| IL_7PIA_205 | No text annotation | ||
| IL_7PIA_121 | No text annotation | ||
| IL_7PIA_122 | Isolated cWH basepair | ||
| IL_7PIA_123 | tWH-tWH-tHW-tHW | ||
| IL_7PIA_124 | Isolated non-canonical cWW pair | ||
| IL_7PIA_125 | No text annotation | ||
| IL_7PIA_126 | No text annotation | ||
| IL_7PIA_232 | No text annotation | ||
| IL_7PIA_127 | No text annotation | ||
| IL_7PIA_128 | Single stack bend | ||
| IL_7PIA_129 | Single stack bend | ||
| IL_7PIA_206 | Single bulged U | ||
| IL_7PIA_130 | Isolated non-canonical cWW pair | ||
| IL_7PIA_131 | C-loop | ||
| IL_7PIA_233 | Single bulged G | ||
| IL_7PIA_207 | Single bulged G, near cWW | ||
| IL_7PIA_132 | No text annotation | ||
| IL_7PIA_133 | No text annotation | ||
| IL_7PIA_134 | tSH-tHW-tWW | ||
| IL_7PIA_135 | No text annotation | ||
| IL_7PIA_136 | SSU/LSU pseudoknot | ||
| IL_7PIA_137 | Kink-turn related | ||
| IL_7PIA_138 | No text annotation | ||
| IL_7PIA_234 | No text annotation | ||
| IL_7PIA_139 | No text annotation | ||
| IL_7PIA_140 | No text annotation | ||
| IL_7PIA_141 | No text annotation | ||
| IL_7PIA_142 | Major groove minor groove platform; mini C-loop | ||
| IL_7PIA_143 | No text annotation | ||
| IL_7PIA_235 | No text annotation | ||
| IL_7PIA_144 | Major groove platform; stack outside cWW | ||
| IL_7PIA_145 | No text annotation | ||
| IL_7PIA_236 | No text annotation | ||
| IL_7PIA_146 | No text annotation | ||
| IL_7PIA_208 | Tandem non-canonical cWW pairs | ||
| IL_7PIA_147 | Triple non-canonical cWW pairs | ||
| IL_7PIA_148 | Kink-turn | ||
| IL_7PIA_149 | No text annotation | ||
| IL_7PIA_209 | No text annotation | ||
| IL_7PIA_150 | No text annotation | ||
| IL_7PIA_151 | Single stack bend | ||
| IL_7PIA_152 | Single bulged A | ||
| IL_7PIA_210 | No text annotation | ||
| IL_7PIA_153 | No text annotation | ||
| IL_7PIA_154 | No text annotation | ||
| IL_7PIA_155 | Minor groove platform | ||
| IL_7PIA_156 | No text annotation | ||
| IL_7PIA_157 | No text annotation | ||
| IL_7PIA_158 | Single bulged U | ||
| IL_7PIA_159 | Tandem non-canonical cWW pairs | ||
| IL_7PIA_237 | No text annotation | ||
| IL_7PIA_211 | Isolated cWS basepair | ||
| IL_7PIA_160 | No text annotation | ||
| IL_7PIA_161 | No text annotation | ||
| IL_7PIA_162 | Isolated non-canonical cWW pair | ||
| IL_7PIA_238 | No text annotation | ||
| IL_7PIA_163 | No text annotation | ||
| IL_7PIA_164 | No text annotation | ||
| IL_7PIA_212 | No text annotation | ||
| IL_7PIA_165 | 180 degree turn | ||
| IL_7PIA_166 | No text annotation | ||
| IL_7PIA_167 | Minor groove platform | ||
| IL_7PIA_239 | No text annotation | ||
| IL_7PIA_168 | No text annotation | ||
| IL_7PIA_169 | No text annotation | ||
| IL_7PIA_170 | No text annotation | ||
| IL_7PIA_171 | Isolated non-canonical cWW pair | ||
| IL_7PIA_172 | No text annotation | ||
| IL_7PIA_173 | Isolated non-canonical cWW pair | ||
| IL_7PIA_213 | Tandem non-canonical cWW pairs | ||
| IL_7PIA_174 | Double sheared | ||
| IL_7PIA_175 | Tandem non-canonical cWW pairs | ||
| IL_7PIA_176 | No text annotation | ||
| IL_7PIA_177 | No text annotation | ||
| IL_7PIA_214 | No text annotation | ||
| IL_7PIA_178 | No text annotation | ||
| IL_7PIA_179 | Isolated non-canonical cWW pair | ||
| IL_7PIA_180 | Isolated non-canonical cWW pair |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7PIA_030 | No text annotation | ||
| J3_7PIA_019 | No text annotation | ||
| J3_7PIA_020 | No text annotation | ||
| J3_7PIA_001 | No text annotation | ||
| J3_7PIA_021 | No text annotation | ||
| J3_7PIA_002 | No text annotation | ||
| J3_7PIA_022 | No text annotation | ||
| J3_7PIA_003 | No text annotation | ||
| J3_7PIA_004 | No text annotation | ||
| J3_7PIA_031 | No text annotation | ||
| J3_7PIA_005 | No text annotation | ||
| J3_7PIA_023 | No text annotation | ||
| J3_7PIA_024 | No text annotation | ||
| J3_7PIA_032 | No text annotation | ||
| J3_7PIA_006 | No text annotation | ||
| J3_7PIA_007 | No text annotation | ||
| J3_7PIA_008 | No text annotation | ||
| J3_7PIA_025 | No text annotation | ||
| J3_7PIA_009 | No text annotation | ||
| J3_7PIA_010 | No text annotation | ||
| J3_7PIA_026 | No text annotation | ||
| J3_7PIA_011 | No text annotation | ||
| J3_7PIA_012 | No text annotation | ||
| J3_7PIA_013 | No text annotation | ||
| J3_7PIA_033 | No text annotation | ||
| J3_7PIA_027 | No text annotation | ||
| J3_7PIA_014 | No text annotation | ||
| J3_7PIA_028 | No text annotation | ||
| J3_7PIA_015 | No text annotation | ||
| J3_7PIA_016 | No text annotation | ||
| J3_7PIA_017 | No text annotation | ||
| J3_7PIA_034 | No text annotation | ||
| J3_7PIA_029 | No text annotation | ||
| J3_7PIA_018 | No text annotation | ||
| J4_7PIA_014 | No text annotation | ||
| J4_7PIA_001 | No text annotation | ||
| J4_7PIA_002 | No text annotation | ||
| J4_7PIA_015 | No text annotation | ||
| J4_7PIA_003 | No text annotation | ||
| J4_7PIA_016 | No text annotation | ||
| J4_7PIA_004 | No text annotation | ||
| J4_7PIA_017 | No text annotation | ||
| J4_7PIA_005 | No text annotation | ||
| J4_7PIA_006 | No text annotation | ||
| J4_7PIA_018 | No text annotation | ||
| J4_7PIA_007 | No text annotation | ||
| J4_7PIA_019 | No text annotation | ||
| J4_7PIA_008 | No text annotation | ||
| J4_7PIA_020 | No text annotation | ||
| J4_7PIA_009 | No text annotation | ||
| J4_7PIA_010 | No text annotation | ||
| J4_7PIA_011 | No text annotation | ||
| J4_7PIA_012 | No text annotation | ||
| J4_7PIA_013 | No text annotation | ||
| J5_7PIA_001 | No text annotation | ||
| J5_7PIA_011 | No text annotation | ||
| J5_7PIA_002 | No text annotation | ||
| J5_7PIA_003 | No text annotation | ||
| J5_7PIA_004 | No text annotation | ||
| J5_7PIA_005 | No text annotation | ||
| J5_7PIA_006 | No text annotation | ||
| J5_7PIA_007 | No text annotation | ||
| J5_7PIA_012 | No text annotation | ||
| J5_7PIA_008 | No text annotation | ||
| J5_7PIA_009 | No text annotation | ||
| J5_7PIA_010 | No text annotation | ||
| J6_7PIA_003 | No text annotation | ||
| J6_7PIA_001 | No text annotation | ||
| J6_7PIA_002 | No text annotation | ||
| J7_7PIA_002 | No text annotation | ||
| J7_7PIA_001 | No text annotation |
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