HL_7PIA_029

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

CGUAACAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIA_029 not in the Motif Atlas

Geometric match to HL_1MMS_002

Geometric discrepancy: 0.2813

The information below is about HL_1MMS_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7PIA|1|3|C|1127
7PIA|1|3|G|1128
7PIA|1|3|U|1129
7PIA|1|3|A|1130
7PIA|1|3|A|1131
7PIA|1|3|C|1132
7PIA|1|3|A|1133
7PIA|1|3|G|1134

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L36

Chain e

50S ribosomal protein L6

Chain h

50S ribosomal protein L11