HL_7PIA_040

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

GAACACAC

Length

8 nucleotides

Bulged bases

7PIA|1|3|A|1648, 7PIA|1|3|C|1649, 7PIA|1|3|A|1650, 7PIA|1|3|A|1652

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIA_040 not in the Motif Atlas

Geometric match to HL_8G9Z_001

Geometric discrepancy: 0.1503

The information below is about HL_8G9Z_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

7PIA|1|3|G|1646
7PIA|1|3|A|1647
7PIA|1|3|A|1648
7PIA|1|3|C|1649
7PIA|1|3|A|1650
7PIA|1|3|C|1651
7PIA|1|3|A|1652
7PIA|1|3|C|1653

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34

Chain m

50S ribosomal protein L17

Chain r

50S ribosomal protein L22