HL_7PIA_055

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

GGUUGGAAAUC

Length

11 nucleotides

Bulged bases

7PIA|1|3|A|2317

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIA_055 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.3677

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

7PIA|1|3|G|2311
7PIA|1|3|G|2312
7PIA|1|3|U|2313
7PIA|1|3|U|2314
7PIA|1|3|G|2315
7PIA|1|3|G|2316
7PIA|1|3|A|2317
7PIA|1|3|A|2318
7PIA|1|3|A|2319
7PIA|1|3|U|2320
7PIA|1|3|C|2321

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain d

50S ribosomal protein L5