HL_7PIA_058

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

CAGUAUGGAAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIA_058 not in the Motif Atlas

Geometric match to HL_1U0B_002

Geometric discrepancy: 0.2726

The information below is about HL_1U0B_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

43

Unit IDs

7PIA|1|3|C|2411
7PIA|1|3|A|2412
7PIA|1|3|G|2413
7PIA|1|3|U|2414
7PIA|1|3|A|2415
7PIA|1|3|U|2416
7PIA|1|3|G|2417
7PIA|1|3|G|2418
7PIA|1|3|A|2419
7PIA|1|3|A|2420
7PIA|1|3|U|2421
7PIA|1|3|G|2422

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain k

50S ribosomal protein L15