HL_7PIA_061

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIA_061 not in the Motif Atlas

Geometric match to HL_5LM7_001

Geometric discrepancy: 0.241

The information below is about HL_5LM7_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7PIA|1|3|C|2559
7PIA|1|3|U|2560
7PIA|1|3|G|2561
7PIA|1|3|U|2562
7PIA|1|3|U|2563
7PIA|1|3|C|2564
7PIA|1|3|G|2565

Current chains

Chain 3

23S ribosomal RNA

Nearby chains