HL_7PIA_066

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

AAAGACGAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIA_066 not in the Motif Atlas

Geometric match to HL_5TBW_070

Geometric discrepancy: 0.2928

The information below is about HL_5TBW_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

7PIA|1|3|A|2823
7PIA|1|3|A|2824
7PIA|1|3|A|2825
7PIA|1|3|G|2826
7PIA|1|3|A|2827
7PIA|1|3|C|2828
7PIA|1|3|G|2829
7PIA|1|3|A|2830
7PIA|1|3|U|2831

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L3

Chain m

50S ribosomal protein L17

Chain y

50S ribosomal protein L32