HL_7PIA_080

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

7PIA|1|5|U|417, 7PIA|1|5|U|418, 7PIA|1|5|A|419

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIA_080 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.3835

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

7PIA|1|5|C|415
7PIA|1|5|U|416
7PIA|1|5|U|417
7PIA|1|5|U|418
7PIA|1|5|A|419
7PIA|1|5|A|420
7PIA|1|5|G|421

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain B

30S ribosomal protein S3

Chain C

30S ribosomal protein S4