HL_7PIA_089

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIA_089 not in the Motif Atlas

Geometric match to HL_6UFH_004

Geometric discrepancy: 0.2997

The information below is about HL_6UFH_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7PIA|1|5|C|891
7PIA|1|5|G|892
7PIA|1|5|C|893
7PIA|1|5|A|894
7PIA|1|5|A|895
7PIA|1|5|G|896

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain 3

Large subunit ribosomal RNA; LSU rRNA