HL_7PIA_105

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

UCUGAAGAA

Length

9 nucleotides

Bulged bases

7PIA|1|8|A|36

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIA_105 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1185

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

7PIA|1|8|U|32
7PIA|1|8|C|33
7PIA|1|8|U|34
7PIA|1|8|G|35
7PIA|1|8|A|36
7PIA|1|8|A|37
7PIA|1|8|G|38
7PIA|1|8|A|39
7PIA|1|8|A|40

Current chains

Chain 8

tRNA-Phe

Nearby chains

Chain 5

Small subunit ribosomal RNA; SSU rRNA

Chain 7

Transfer RNA; tRNA

Chain H

30S ribosomal protein S9