HL_7PIA_106
3D structure
- PDB id
- 7PIA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.6 Å
Loop
- Sequence
- GUUCGAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7PIA_106 not in the Motif Atlas
- Geometric match to HL_4GXY_002
- Geometric discrepancy: 0.3217
- The information below is about HL_4GXY_002
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
7PIA|1|8|G|54
7PIA|1|8|U|55
7PIA|1|8|U|56
7PIA|1|8|C|57
7PIA|1|8|G|58
7PIA|1|8|A|59
7PIA|1|8|U|60
7PIA|1|8|U|61
7PIA|1|8|C|62
Current chains
- Chain 8
- tRNA-Phe
Nearby chains
- Chain 3
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: