HL_7PIA_116
3D structure
- PDB id
- 7PIA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.6 Å
Loop
- Sequence
- GUUCCAUUUCGAACC
- Length
- 15 nucleotides
- Bulged bases
- 7PIA|1|4|U|39, 7PIA|1|4|U|40
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7PIA_116 not in the Motif Atlas
- Homologous match to HL_4V9F_074
- Geometric discrepancy: 0.4309
- The information below is about HL_4V9F_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.3
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
7PIA|1|4|G|32
7PIA|1|4|U|33
7PIA|1|4|U|34
7PIA|1|4|C|35
7PIA|1|4|C|36
7PIA|1|4|A|37
7PIA|1|4|U|38
7PIA|1|4|U|39
7PIA|1|4|U|40
7PIA|1|4|C|41
7PIA|1|4|G|42
7PIA|1|4|A|43
7PIA|1|4|A|44
7PIA|1|4|C|45
7PIA|1|4|C|46
Current chains
- Chain 4
- 5S ribosomal RNA
Nearby chains
- Chain 3
- Large subunit ribosomal RNA; LSU rRNA
- Chain d
- 50S ribosomal protein L5
- Chain n
- 50S ribosomal protein L18
- Chain x
- 50S ribosomal protein L31
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