HL_7PIA_118

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

GUUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIA_118 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2586

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

7PIA|1|5|G|855
7PIA|1|5|U|856
7PIA|1|5|U|857
7PIA|1|5|A|858
7PIA|1|5|A|859
7PIA|1|5|C|860
7PIA|1|5|A|861
7PIA|1|5|C|862

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S5

Chain G

30S ribosomal protein S8