HL_7PIB_014

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIB_014 not in the Motif Atlas

Geometric match to HL_4WF9_015

Geometric discrepancy: 0.1836

The information below is about HL_4WF9_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

7PIB|1|3|C|498
7PIB|1|3|G|499
7PIB|1|3|U|500
7PIB|1|3|G|501
7PIB|1|3|A|502
7PIB|1|3|G|503

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34

Chain c

50S ribosomal protein L4