RNA 3D Hub //

7PIB Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7PIB_0011/3/61:70tRNA anticodon loop
geometric
HL_6JXM_002
HL_97725.1
HL_7PIB_0021/3/89:97No text annotation
HL_7PIB_0031/3/124:129No text annotation
geometric
HL_4WF9_003
HL_75660.9
HL_7PIB_0071/3/229:234No text annotation
geometric
HL_4C9D_002
HL_36488.2
HL_7PIB_0081/3/250:256No text annotation
geometric
HL_5J7L_141
NA
HL_7PIB_1091/3/339:346T-loop with 2 stacked bulged bases
homologous
HL_5J7L_142
NA
HL_7PIB_0131/3/446:453Pseudoknot geometry
geometric
HL_4WF9_014
HL_30680.5
HL_7PIB_0141/3/498:503GNRA
geometric
HL_4WF9_015
HL_34789.5
HL_7PIB_0151/3/523:528GNRA
geometric
HL_5J7L_027
NA
HL_7PIB_0171/3/598:609No text annotation
geometric
HL_4V9I_040
NA
HL_7PIB_0181/3/646:652GNRA
geometric
HL_5TBW_025
NA
HL_7PIB_0191/3/665:670GNRA
geometric
HL_5J7L_152
NA
HL_7PIB_0221/3/779:788No text annotation
geometric
HL_4WF9_023
HL_50204.2
HL_7PIB_0231/3/813:821No text annotation
geometric
HL_6CF2_001
HL_46211.1
HL_7PIB_0241/3/861:866No text annotation
geometric
HL_4V9F_026
HL_27530.2
HL_7PIB_0261/3/991:998GNRA
geometric
HL_5LM7_001
HL_34789.5
HL_7PIB_0271/3/1015:1021No text annotation
HL_7PIB_0311/3/1252:1257No text annotation
geometric
HL_1WZ2_007
HL_75660.9
HL_7PIB_0321/3/1309:1317T-loop with 2 stacked bulged bases
geometric
HL_5TBW_031
NA
HL_7PIB_0331/3/1352:1358Pseudoknot geometry with 3' bulge
geometric
HL_4WF9_033
HL_49081.1
HL_7PIB_0341/3/1391:1396GNRA
geometric
HL_7RQB_035
NA
HL_7PIB_0351/3/1417:1426No text annotation
geometric
HL_4V9F_037
HL_77449.2
HL_7PIB_0371/3/1517:1523Pseudoknot geometry with 3' bulge
geometric
HL_5TBW_032
NA
HL_7PIB_0391/3/1599:1602Mini UNCG
geometric
HL_4WF9_037
HL_90436.4
HL_7PIB_0401/3/1646:1653No text annotation
geometric
HL_1WZ2_007
HL_75660.9
HL_7PIB_0411/3/1663:1671GNRA with extra cWW
homologous
HL_4WF9_039
HL_87268.3
HL_7PIB_0431/3/1746:1753GNRA with tandem sheared
geometric
HL_5J7L_154
NA
HL_7PIB_0441/3/1759:1763No text annotation
geometric
HL_7RQB_011
NA
HL_7PIB_0451/3/1784:1794No text annotation
geometric
HL_5TBW_046
NA
HL_7PIB_0461/3/1813:1818No text annotation
geometric
HL_2Y8W_001
HL_40612.1
HL_7PIB_0481/3/1917:1927No text annotation
geometric
HL_2ZZM_002
HL_33487.2
HL_7PIB_0491/3/1956:1964No text annotation
geometric
HL_7RQB_049
NA
HL_7PIB_0501/3/2034:2043No text annotation
geometric
HL_4WF9_047
HL_78372.2
HL_7PIB_0521/3/2217:2223No text annotation
geometric
HL_5J7L_185
NA
HL_7PIB_0531/3/2256:2264LSU P loop
geometric
HL_4V9F_055
HL_11974.3
HL_7PIB_0541/3/2272:2284No text annotation
geometric
HL_4WF9_050
HL_02042.2
HL_7PIB_0561/3/2332:2339Pseudoknot geometry
geometric
HL_7RQB_056
NA
HL_7PIB_0571/3/2363:2370GNRA with extra cWW
geometric
HL_4WF9_053
HL_87268.3
HL_7PIB_0591/3/2412:2421No text annotation
geometric
HL_7RQB_059
NA
HL_7PIB_0611/3/2536:2543GNRA variation
geometric
HL_5J7L_194
NA
HL_7PIB_0621/3/2559:2565LSU A loop
geometric
HL_4WF9_058
HL_48677.2
HL_7PIB_0631/3/2602:2607No text annotation
geometric
HL_4WF9_003
HL_75660.9
HL_7PIB_0641/3/2666:2671GNRA
geometric
HL_4V9F_070
HL_34789.5
HL_7PIB_0661/3/2753:2767No text annotation
geometric
HL_4V9F_068
HL_53269.3
HL_7PIB_0671/3/2801:2809No text annotation
HL_7PIB_0681/3/2823:2831No text annotation
geometric
HL_5TBW_070
NA
HL_7PIB_0711/5/13:23No text annotation
homologous
HL_5J7L_001
NA
HL_7PIB_0781/5/316:329No text annotation
homologous
HL_4LFB_008
HL_39665.1
HL_7PIB_0801/5/375:380GNRA
homologous
HL_4LFB_010
HL_34789.5
HL_7PIB_0831/5/520:525Mini UNCG
geometric
HL_4YAZ_004
HL_90436.4
HL_7PIB_0861/5/723:728GNRA
homologous
HL_4LFB_016
HL_34789.5
HL_7PIB_0871/5/783:793No text annotation
homologous
HL_5J7L_017
NA
HL_7PIB_0881/5/835:842No text annotation
geometric
HL_5NFV_001
HL_69752.4
HL_7PIB_0891/5/856:861GNRA
homologous
HL_5J7L_019
NA
HL_7PIB_0901/5/891:896GNRA
homologous
HL_4LFB_020
HL_34789.5
HL_7PIB_0931/5/1067:1072GNRA
homologous
HL_5J7L_023
NA
HL_7PIB_0941/5/1080:1087T-loop related
homologous
HL_4LFB_025
HL_63894.3
HL_7PIB_1011/5/1490:1495GNRA
homologous
HL_5J7L_031
NA

Problematic loops

#loop idProblemSequence
HL_7PIB_108No text annotation
HL_7PIB_004No text annotation
HL_7PIB_005No text annotation
HL_7PIB_006No text annotation
HL_7PIB_009No text annotation
HL_7PIB_010No text annotation
HL_7PIB_011T-loop with unstacked turn
HL_7PIB_110No text annotation
HL_7PIB_012No text annotation
HL_7PIB_016No text annotation
HL_7PIB_111No text annotation
HL_7PIB_020No text annotation
HL_7PIB_021No text annotation
HL_7PIB_025No text annotation
HL_7PIB_028No text annotation
HL_7PIB_029GNRA with tandem sheared
HL_7PIB_030No text annotation
HL_7PIB_036No text annotation
HL_7PIB_038No text annotation
HL_7PIB_042No text annotation
HL_7PIB_047GNRA
HL_7PIB_051No text annotation
HL_7PIB_112No text annotation
HL_7PIB_055No text annotation
HL_7PIB_058GNRA
HL_7PIB_060No text annotation
HL_7PIB_065Ribsomal LSU H95
HL_7PIB_069No text annotation
HL_7PIB_070No text annotation
HL_7PIB_072UNCG variation
HL_7PIB_073GNRA with extra near cWW
HL_7PIB_113GNRA
HL_7PIB_074No text annotation
HL_7PIB_075Mini UNCG
HL_7PIB_076GNRA related
HL_7PIB_077GNRA
HL_7PIB_079UNCG
HL_7PIB_081UNCG variation
HL_7PIB_082No text annotation
HL_7PIB_084GNRA-like with tWH
HL_7PIB_085No text annotation
HL_7PIB_091No text annotation
HL_7PIB_092GNRA
HL_7PIB_095No text annotation
HL_7PIB_096No text annotation
HL_7PIB_097No text annotation
HL_7PIB_098T-loop with 3 stacked bulged bases
HL_7PIB_099No text annotation
HL_7PIB_100UNCG
HL_7PIB_102No text annotation
HL_7PIB_103No text annotation
HL_7PIB_104T-loop with 2 stacked bulged bases
HL_7PIB_105No text annotation
HL_7PIB_106No text annotation
HL_7PIB_107T-loop with 2 stacked bulged bases

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7PIB_0021/3/26:32,
1/3/545:551		Triple sheared with non-canonical cWW
geometric
IL_7A0S_001
IL_22311.2
IL_7PIB_0031/3/38:39,
1/3/478:480		Single bulged A
geometric
IL_4WF9_002
IL_14190.3
IL_7PIB_0051/3/83:87,
1/3/99:106		Kink-turn
geometric
IL_5J7L_035
NA
IL_7PIB_0061/3/187:188,
1/3/216:218		Single stack bend
geometric
IL_7RQB_024
NA
IL_7PIB_0071/3/192:198,
1/3/205:212		8x7 Sarcin-Ricin; G-bulge
geometric
IL_7A0S_006
IL_62167.4
IL_7PIB_0081/3/243:249,
1/3/257:262		7x6 Sarcin-Ricin; G-bulge
geometric
IL_7RQB_007
NA
IL_7PIB_0101/3/302:303,
1/3/401:404		Major groove platform
geometric
IL_5J7L_393
NA
IL_7PIB_0111/3/307:313,
1/3/394:397		No text annotation
IL_7PIB_0131/3/327:329,
1/3/377:381		No text annotation
geometric
IL_5J7L_254
NA
IL_7PIB_0151/3/571:574,
1/3/587:590		Double sheared
geometric
IL_5J7L_256
NA
IL_7PIB_0161/3/640:644,
1/3/654:658		AAA cross-strand stack
geometric
IL_7RQB_016
NA
IL_7PIB_0171/3/707:709,
1/3/841:843		Isolated non-canonical cWW pair
geometric
IL_3GM7_004
IL_01003.5
IL_7PIB_1751/3/707:713,
1/3/834:843		No text annotation
IL_7PIB_0181/3/709:713,
1/3/834:841		tHW-tHW cross-strand stack
geometric
IL_5J7L_260
NA
IL_7PIB_0191/3/732:733,
1/3/798:800		Single bulged A
geometric
IL_4WF9_022
IL_14190.3
IL_7PIB_0221/3/773:775,
1/3/792:793		Major groove platform
geometric
IL_7A0S_085
IL_48076.9
IL_7PIB_0231/3/776:778,
1/3/789:791		Isolated non-canonical cWW pair
geometric
IL_5TBW_046
NA
IL_7PIB_0241/3/810:812,
1/3/822:826		Multiple bulged bases
geometric
IL_7A0S_021
IL_89509.2
IL_7PIB_1771/3/888:899,
1/3/950:962		No text annotation
IL_7PIB_0271/3/891:899,
1/3/950:959		No text annotation
IL_7PIB_2071/3/900:905,
1/3/946:949		C-loop with bulged stacked A's
homologous
IL_9DFE_028
IL_16301.2
IL_7PIB_0291/3/907:909,
1/3/942:944		Isolated non-canonical cWW pair
geometric
IL_3NJ7_003
IL_42997.6
IL_7PIB_0301/3/1013:1015,
1/3/1021:1022		Single stack bend
geometric
IL_7A0S_054
IL_15011.4
IL_7PIB_0321/3/1034:1038,
1/3/1188:1192		UAA/GAN
geometric
IL_7A0S_033
IL_08938.2
IL_7PIB_0331/3/1040:1047,
1/3/1185:1186		SSU/LSU pseudoknot
geometric
IL_4WF9_037
IL_46868.1
IL_7PIB_1781/3/1040:1049,
1/3/1183:1186		Tandem non-canonical cWW pairs
geometric
IL_1MFQ_004
IL_15225.3
IL_7PIB_0341/3/1053:1059,
1/3/1175:1179		Kink-turn related
geometric
IL_5J7L_280
NA
IL_7PIB_0351/3/1059:1065,
1/3/1159:1175		No text annotation
geometric
IL_5J7L_281
NA
IL_7PIB_0361/3/1066:1069,
1/3/1156:1158		Isolated non-canonical cWW pair
geometric
IL_7RQB_041
NA
IL_7PIB_0371/3/1078:1086,
1/3/1143:1147		Kink-turn
geometric
IL_5J7L_284
NA
IL_7PIB_0411/3/1238:1245,
1/3/1264:1268		Kink-turn
geometric
IL_3U4M_004
IL_90775.2
IL_7PIB_0431/3/1338:1341,
1/3/1637:1638		Major groove platform; stack outside cWW
geometric
IL_7RQB_050
NA
IL_7PIB_0441/3/1347:1351,
1/3/1359:1361		Major groove minor groove platform with tHH
geometric
IL_4WF9_050
IL_06671.2
IL_7PIB_0451/3/1379:1383,
1/3/1404:1408		UAA/GAN
geometric
IL_4WF9_051
IL_89021.4
IL_7PIB_0461/3/1385:1389,
1/3/1398:1402		tSH-tWH-tHS
geometric
IL_5J7L_293
NA
IL_7PIB_0491/3/1458:1463,
1/3/1591:1597		No text annotation
IL_7PIB_2101/3/1494:1497,
1/3/1546:1550		No text annotation
homologous
IL_5J7L_299
NA
IL_7PIB_1811/3/1514:1516,
1/3/1524:1525		Single bulged A
homologous
IL_5J7L_302
NA
IL_7PIB_1821/3/1700:1708,
1/3/1997:2001		No text annotation
homologous
IL_7A0S_109
IL_80252.2
IL_7PIB_0581/3/1703:1708,
1/3/1997:2000		No text annotation
homologous
IL_8VTW_066
NA
IL_7PIB_0611/3/1805:1811,
1/3/1820:1828		Kink-turn related
geometric
IL_4WF9_069
IL_17069.6
IL_7PIB_0631/3/1848:1849,
1/3/1905:1908		Major groove intercalation
geometric
IL_5J7L_315
NA
IL_7PIB_0641/3/1853:1856,
1/3/1900:1901		Major groove minor groove platform; mini C-loop
geometric
IL_5J7L_316
NA
IL_7PIB_0651/3/1858:1862,
1/3/1894:1898		UAA/GAN with extra stack
geometric
IL_7RQB_074
NA
IL_7PIB_0681/3/1941:1952,
1/3/1968:1971		No text annotation
geometric
IL_4WF9_077
IL_84014.2
IL_7PIB_0711/3/2061:2063,
1/3/2620:2623		No text annotation
geometric
IL_5J7L_321
NA
IL_7PIB_0731/3/2077:2078,
1/3/2446:2449		Minor groove platform
geometric
IL_7RQB_081
NA
IL_7PIB_0831/3/2210:2213,
1/3/2227:2229		Isolated non-canonical cWW pair
geometric
IL_4V88_426
NA
IL_7PIB_2131/3/2305:2307,
1/3/2325:2329		No text annotation
geometric
IL_5J7L_332
NA
IL_7PIB_0851/3/2358:2361,
1/3/2372:2375		Double sheared
geometric
IL_4WF9_087
IL_58355.3
IL_7PIB_0871/3/2462:2463,
1/3/2504:2506		Major groove platform
geometric
IL_1S03_004
IL_48076.9
IL_7PIB_0891/3/2467:2469,
1/3/2497:2501		Major groove minor groove platform with extra cWW
geometric
IL_5J7L_337
NA
IL_7PIB_0901/3/2474:2478,
1/3/2488:2492		Double sheared with non-canonical cWW
geometric
IL_7A0S_087
IL_87767.3
IL_7PIB_0911/3/2515:2516,
1/3/2588:2590		Major groove platform
geometric
IL_5TBW_104
NA
IL_7PIB_0921/3/2518:2520,
1/3/2582:2586		Isolated non-canonical cWW with bulges
geometric
IL_4WF9_095
IL_68118.5
IL_7PIB_0931/3/2520:2521,
1/3/2579:2582		No text annotation
geometric
IL_4WF9_096
IL_44609.3
IL_7PIB_0941/3/2529:2531,
1/3/2548:2552		No text annotation
IL_7PIB_0961/3/2644:2649,
1/3/2781:2790		No text annotation
IL_7PIB_0971/3/2660:2666,
1/3/2671:2676		Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_7A0S_094
IL_16458.6
IL_7PIB_1891/3/2689:2692,
1/3/2733:2735		No text annotation
IL_7PIB_0991/3/2695:2699,
1/3/2726:2730		UAA/GAN related, with intercalation
geometric
IL_4WF9_102
IL_82016.1
IL_7PIB_1001/3/2703:2704,
1/3/2719:2722		Multiple bulged bases
geometric
IL_4WF9_103
IL_44609.3
IL_7PIB_1011/3/2745:2750,
1/3/2770:2775		UAA/GAN with extra cWW
geometric
IL_5J7L_350
NA
IL_7PIB_1901/3/2842:2843,
1/3/2882:2884		Major groove platform
homologous
IL_4WF9_106
IL_77710.2
IL_7PIB_2151/3/2847:2849,
1/3/2875:2878		No text annotation
homologous
IL_4WF9_107
IL_05502.1
IL_7PIB_2171/5/29:33,
1/5/550:553		No text annotation
geometric
IL_8BH9_001
IL_65740.2
IL_7PIB_1111/5/45:46,
1/5/392:394		Single bulged A
homologous
IL_5J7L_002
NA
IL_7PIB_1121/5/48:53,
1/5/355:357		No text annotation
geometric
IL_5J7L_003
NA
IL_7PIB_1131/5/64:67,
1/5/88:89		Multiple bulged bases
homologous
IL_6CZR_117
NA
IL_7PIB_1201/5/238:243,
1/5/273:280		Kink-turn with non-sequential stacking
geometric
IL_4V88_402
NA
IL_7PIB_1231/5/363:365,
1/5/388:389		Single bulged U
homologous
IL_4LFB_014
IL_97561.6
IL_7PIB_1241/5/367:371,
1/5/385:386		C-loop
homologous
IL_5J7L_018
NA
IL_7PIB_1251/5/371:372,
1/5/383:385		Single bulged G
geometric
IL_5J7L_019
NA
IL_7PIB_1321/5/513:519,
1/5/526:534		Kink-turn related
homologous
IL_5J7L_025
NA
IL_7PIB_1331/5/567:573,
1/5/874:875		No text annotation
homologous
IL_6CZR_134
NA
IL_7PIB_1341/5/578:582,
1/5/754:758		tSH-tWH-tHS
homologous
IL_5J7L_027
NA
IL_7PIB_1371/5/603:609,
1/5/627:630		No text annotation
IL_7PIB_1381/5/651:652,
1/5/748:751		Major groove platform; stack outside cWW
homologous
IL_4LFB_027
IL_74641.3
IL_7PIB_1401/5/659:663,
1/5/737:740		Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
NA
IL_7PIB_1431/5/771:775,
1/5/801:802		Left turn
homologous
IL_5J7L_036
NA
IL_7PIB_1441/5/776:780,
1/5/796:800		tSH-tWH-tHS
homologous
IL_4LFB_033
IL_05821.2
IL_7PIB_2191/5/881:889,
1/5/898:904		No text annotation
IL_7PIB_2201/5/916:918,
1/5/1368:1371		Isolated non-canonical cWW pair
geometric
IL_8CRE_464
IL_71625.4
IL_7PIB_1471/5/920:922,
1/5/1365:1366		Single bulged G
geometric
IL_5J7L_040
NA
IL_7PIB_1621/5/1374:1376,
1/5/1476:1479		No text annotation
homologous
IL_5J7L_058
NA
IL_7PIB_2041/5/1376:1379,
1/5/1472:1476		No text annotation
homologous
IL_5J7L_059
NA
IL_7PIB_1651/5/1382:1384,
1/5/1466:1469		No text annotation
IL_7PIB_1661/5/1387:1389,
1/5/1461:1463		Isolated non-canonical cWW pair
homologous
IL_5J7L_061
NA
IL_7PIB_1671/5/1389:1394,
1/5/1456:1461		No text annotation

Problematic loops

#loop idProblemSequence
IL_7PIB_001Isolated non-canonical cWW pair
IL_7PIB_004Minor groove platform
IL_7PIB_1749x8 Sarcin-Ricin; G-bulge
IL_7PIB_009No text annotation
IL_7PIB_012Tandem non-canonical cWW pairs
IL_7PIB_014Minor groove platform
IL_7PIB_020Single bulged G
IL_7PIB_021Triple sheared
IL_7PIB_025Single stack bend
IL_7PIB_176No text annotation
IL_7PIB_026No text annotation
IL_7PIB_206No text annotation
IL_7PIB_028No text annotation
IL_7PIB_031Single bulged U
IL_7PIB_038No text annotation
IL_7PIB_039Major groove platform with extra cWW
IL_7PIB_040Isolated cWS basepair
IL_7PIB_179No text annotation
IL_7PIB_042Intercalated cWW
IL_7PIB_047No text annotation
IL_7PIB_208No text annotation
IL_7PIB_048No text annotation
IL_7PIB_209Other IL
IL_7PIB_050No text annotation
IL_7PIB_051No text annotation
IL_7PIB_180No text annotation
IL_7PIB_052Double sheared
IL_7PIB_053No text annotation
IL_7PIB_054Isolated non-canonical cWW with bulges
IL_7PIB_055No text annotation
IL_7PIB_056Isolated tWW turn
IL_7PIB_057Major groove platform; stack outside cWW
IL_7PIB_059tSH-tSH-tHH-tHS
IL_7PIB_060Single stack bend
IL_7PIB_183No text annotation
IL_7PIB_062Minor groove platform, major groove intercalation
IL_7PIB_184No text annotation
IL_7PIB_066No text annotation
IL_7PIB_067UAA/GAN related
IL_7PIB_211No text annotation
IL_7PIB_069Isolated non-canonical cWW pair
IL_7PIB_185No text annotation
IL_7PIB_070No text annotation
IL_7PIB_072Single bulged U
IL_7PIB_074Isolated tHS basepair with bulges
IL_7PIB_075Isolated cWH basepair
IL_7PIB_076Isolated non-canonical cWW pair
IL_7PIB_077No text annotation
IL_7PIB_186No text annotation
IL_7PIB_078No text annotation
IL_7PIB_079No text annotation
IL_7PIB_080No text annotation
IL_7PIB_081No text annotation
IL_7PIB_212No text annotation
IL_7PIB_082Single stack bend
IL_7PIB_084No text annotation
IL_7PIB_086Single bulged U
IL_7PIB_088Major groove platform with extra pair
IL_7PIB_214Major groove platform
IL_7PIB_187No text annotation
IL_7PIB_095Single bulged A
IL_7PIB_188Single stack bend
IL_7PIB_098C-loop
IL_7PIB_102Isolated non-canonical cWW with bulges
IL_7PIB_103Multiple bulged bases with non-canonical cWW
IL_7PIB_216tHS double platform
IL_7PIB_104No text annotation
IL_7PIB_191Isolated cWH basepair
IL_7PIB_105No text annotation
IL_7PIB_106Isolated cWS basepair
IL_7PIB_107No text annotation
IL_7PIB_108Major groove minor groove platform; mini C-loop
IL_7PIB_109Symmetric double minor groove platform
IL_7PIB_192No text annotation
IL_7PIB_110No text annotation
IL_7PIB_114Tandem non-canonical cWW pairs
IL_7PIB_193Partly complementary
IL_7PIB_194Multiple bulged bases
IL_7PIB_115Isolated non-canonical cWW pair
IL_7PIB_116Minor groove platform related
IL_7PIB_117Tandem non-canonical cWW pairs
IL_7PIB_118Isolated cWH basepair
IL_7PIB_119tWH-tWH-tHW-tHW
IL_7PIB_195No text annotation
IL_7PIB_121No text annotation
IL_7PIB_122C-loop
IL_7PIB_126No text annotation
IL_7PIB_196No text annotation
IL_7PIB_127Tandem non-canonical cWW pairs
IL_7PIB_1286x5 Sarcin-Ricin; G-bulge
IL_7PIB_129No text annotation
IL_7PIB_130Single stack bend
IL_7PIB_131SSU/LSU pseudoknot
IL_7PIB_218No text annotation
IL_7PIB_135No text annotation
IL_7PIB_136Major groove minor groove platform; mini C-loop
IL_7PIB_197No text annotation
IL_7PIB_139Single bulged U
IL_7PIB_198Isolated cWS basepair
IL_7PIB_199Triple non-canonical cWW pairs
IL_7PIB_141No text annotation
IL_7PIB_142Kink-turn
IL_7PIB_14510x8 Sarcin-Ricin; G-bulge
IL_7PIB_146No text annotation
IL_7PIB_200Isolated non-canonical cWW pair
IL_7PIB_148No text annotation
IL_7PIB_149Isolated non-canonical cWW pair
IL_7PIB_150No text annotation
IL_7PIB_151Single bulged U
IL_7PIB_221Isolated cWS basepair
IL_7PIB_152No text annotation
IL_7PIB_201No text annotation
IL_7PIB_153Minor groove platform
IL_7PIB_154Single bulged A
IL_7PIB_155Isolated non-canonical cWW pair
IL_7PIB_156No text annotation
IL_7PIB_157No text annotation
IL_7PIB_158180 degree turn
IL_7PIB_202No text annotation
IL_7PIB_159Double sheared with non-canonical cWW
IL_7PIB_222No text annotation
IL_7PIB_160No text annotation
IL_7PIB_161Tandem non-canonical cWW pairs
IL_7PIB_203Isolated non-canonical cWW pair
IL_7PIB_163No text annotation
IL_7PIB_164Isolated non-canonical cWW pair
IL_7PIB_168Tandem non-canonical cWW pairs
IL_7PIB_169No text annotation
IL_7PIB_205No text annotation
IL_7PIB_170Single stack bend
IL_7PIB_171No text annotation
IL_7PIB_223No text annotation
IL_7PIB_172Isolated non-canonical cWW pair
IL_7PIB_173Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7PIB_0351/3/32:33,
1/3/510:520,
1/3/531:545		No text annotation
homologous
J3_9DFE_002
J3_17917.2
J3_7PIB_0241/3/34:37,
1/3/481:497,
1/3/504:509		No text annotation
homologous
J3_9DFE_003
J3_07616.2
J3_7PIB_0011/3/58:59,
1/3/72:78,
1/3/111:115		No text annotation
homologous
J3_5J7L_037
NA
J3_7PIB_0021/3/273:277,
1/3/292:299,
1/3/407:408		No text annotation
homologous
J3_7A0S_003
J3_97971.2
J3_7PIB_0251/3/331:335,
1/3/350:359,
1/3/371:375		No text annotation
homologous
J3_4WF9_015
J3_77124.1
J3_7PIB_0261/3/718:724,
1/3/808:810,
1/3/826:829		No text annotation
homologous
J3_7A0S_004
J3_46658.2
J3_7PIB_0041/3/733:735,
1/3/767:771,
1/3/795:798		No text annotation
homologous
J3_8VTW_002
NA
J3_7PIB_0361/3/1323:1331,
1/3/1659:1661,
1/3/1673:1679		No text annotation
J3_7PIB_0061/3/1326:1331,
1/3/1659:1662,
1/3/1672:1676		No text annotation
J3_7PIB_0071/3/1333:1337,
1/3/1639:1645,
1/3/1654:1657		No text annotation
homologous
J3_4WF9_005
J3_68164.1
J3_7PIB_0081/3/1372:1378,
1/3/1409:1413,
1/3/1430:1431		No text annotation
geometric
J3_7A0S_018
J3_94309.2
J3_7PIB_0371/3/1453:1463,
1/3/1591:1599,
1/3/1602:1607		No text annotation
J3_7PIB_0291/3/2290:2292,
1/3/2392:2404,
1/3/2428:2435		No text annotation
J3_7PIB_0101/3/2303:2305,
1/3/2329:2331,
1/3/2340:2345		No text annotation
homologous
J3_8VTW_007
NA
J3_7PIB_0381/3/2303:2307,
1/3/2325:2331,
1/3/2340:2345		No text annotation
J3_7PIB_0111/3/2525:2528,
1/3/2553:2555,
1/3/2569:2575		No text annotation
homologous
J3_8VTW_008
NA
J3_7PIB_0131/3/2818:2819,
1/3/2835:2840,
1/3/2886:2890		No text annotation
homologous
J3_4WF9_021
J3_76911.2
J3_7PIB_0141/5/47:48,
1/5/357:363,
1/5/389:391		No text annotation
homologous
J3_6CZR_015
NA
J3_7PIB_0151/5/584:586,
1/5/648:651,
1/5/751:752		No text annotation
homologous
J3_5J7L_002
NA
J3_7PIB_0311/5/584:586,
1/5/648:652,
1/5/748:752		No text annotation
homologous
J3_5J7L_051
NA
J3_7PIB_0171/5/823:826,
1/5/851:855,
1/5/862:868		No text annotation
homologous
J3_5J7L_004
NA
J3_7PIB_0391/5/944:957,
1/5/968:980,
1/5/1195:1207		No text annotation
J3_7PIB_0181/5/949:957,
1/5/968:980,
1/5/1195:1201		No text annotation
homologous
J3_6CZR_020
NA
J3_7PIB_0191/5/1054:1059,
1/5/1098:1104,
1/5/1162:1168		No text annotation
homologous
J3_5J7L_008
NA
J4_7PIB_0151/3/272:273,
1/3/408:413,
1/3/435:444,
1/3/455:460		No text annotation
J4_7PIB_0021/3/634:639,
1/3/659:664,
1/3/671:674,
1/3/686:691		No text annotation
J4_7PIB_0031/3/1338:1342,
1/3/1366:1371,
1/3/1432:1433,
1/3/1631:1638		No text annotation
homologous
J4_4WF9_005
J4_77353.2
J4_7PIB_0171/3/1777:1783,
1/3/1795:1799,
1/3/1834:1837,
1/3/1982:1989		No text annotation
J4_7PIB_0061/3/1840:1842,
1/3/1912:1913,
1/3/1931:1941,
1/3/1971:1979		No text annotation
J4_7PIB_0071/3/2293:2297,
1/3/2351:2355,
1/3/2378:2380,
1/3/2389:2391		No text annotation
homologous
J4_5J7L_027
NA
J4_7PIB_0081/3/2651:2654,
1/3/2682:2683,
1/3/2740:2743,
1/3/2777:2779		No text annotation
J4_7PIB_0181/5/100:108,
1/5/234:236,
1/5/282:285,
1/5/307:308		No text annotation
J4_7PIB_0111/5/573:575,
1/5/761:766,
1/5/807:818,
1/5/873:874		No text annotation
homologous
J4_4LFB_003
J4_14595.2
J4_7PIB_0141/8/8:11,
1/8/26:28,
1/8/44:50,
1/8/66:67		tRNA junction
homologous
J4_8VU0_001
J4_95067.1
J5_7PIB_0011/3/49:56,
1/3/117:122,
1/3/131:132,
1/3/151:154,
1/3/178:181		No text annotation
J5_7PIB_0021/3/617:622,
1/3/703:706,
1/3/844:847,
1/3/1226:1227,
1/3/1280:1286		No text annotation
homologous
J5_4WF9_004
J5_74302.6
J5_7PIB_0031/3/1708:1716,
1/3/1740:1741,
1/3/1758:1759,
1/3/1763:1771,
1/3/1995:1997		No text annotation
homologous
J5_4WF9_005
J5_99177.2
J5_7PIB_0081/3/2064:2072,
1/3/2453:2462,
1/3/2506:2515,
1/3/2590:2596,
1/3/2614:2619		No text annotation
J5_7PIB_0091/3/2081:2084,
1/3/2251:2254,
1/3/2266:2267,
1/3/2289:2290,
1/3/2435:2443		No text annotation
homologous
J5_4WF9_007
J5_39529.2
J5_7PIB_0111/5/53:62,
1/5/91:98,
1/5/310:312,
1/5/333:335,
1/5/346:355		No text annotation
J6_7PIB_0021/3/47:48,
1/3/182:187,
1/3/218:228,
1/3/235:239,
1/3/266:270,
1/3/462:469		No text annotation
J7_7PIB_0021/3/852:857,
1/3/870:871,
1/3/979:982,
1/3/1007:1012,
1/3/1023:1027,
1/3/1198:1199,
1/3/1216:1221		No text annotation

Problematic loops

#loop idProblemSequence
J3_7PIB_023No text annotation
J3_7PIB_003No text annotation
J3_7PIB_005No text annotation
J3_7PIB_027No text annotation
J3_7PIB_028No text annotation
J3_7PIB_009No text annotation
J3_7PIB_030No text annotation
J3_7PIB_012No text annotation
J3_7PIB_016No text annotation
J3_7PIB_032No text annotation
J3_7PIB_040No text annotation
J3_7PIB_033No text annotation
J3_7PIB_041No text annotation
J3_7PIB_020No text annotation
J3_7PIB_021No text annotation
J3_7PIB_034No text annotation
J3_7PIB_022No text annotation
J4_7PIB_001No text annotation
J4_7PIB_004No text annotation
J4_7PIB_016No text annotation
J4_7PIB_005No text annotation
J4_7PIB_009No text annotation
J4_7PIB_010No text annotation
J4_7PIB_019No text annotation
J4_7PIB_012No text annotation
J4_7PIB_013tRNA junction
J5_7PIB_004No text annotation
J5_7PIB_005No text annotation
J5_7PIB_010No text annotation
J5_7PIB_006No text annotation
J5_7PIB_007No text annotation
J6_7PIB_001No text annotation
J7_7PIB_001No text annotation

Coloring options:
Copyright 2026 BGSU RNA group. Page generated in 0.1682 s