HL_7PIB_033

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

7PIB|1|3|G|1353, 7PIB|1|3|U|1357

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIB_033 not in the Motif Atlas

Geometric match to HL_4WF9_033

Geometric discrepancy: 0.2367

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

7PIB|1|3|G|1352
7PIB|1|3|G|1353
7PIB|1|3|U|1354
7PIB|1|3|C|1355
7PIB|1|3|G|1356
7PIB|1|3|U|1357
7PIB|1|3|C|1358

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain m

50S ribosomal protein L17

Chain r

50S ribosomal protein L22