HL_7PIB_035

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

7PIB|1|3|U|1424, 7PIB|1|3|U|1425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIB_035 not in the Motif Atlas

Geometric match to HL_4V9F_037

Geometric discrepancy: 0.2705

The information below is about HL_4V9F_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7PIB|1|3|G|1417
7PIB|1|3|U|1418
7PIB|1|3|U|1419
7PIB|1|3|A|1420
7PIB|1|3|A|1421
7PIB|1|3|U|1422
7PIB|1|3|A|1423
7PIB|1|3|U|1424
7PIB|1|3|U|1425
7PIB|1|3|C|1426

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain s

50S ribosomal protein L23