HL_7PIB_036

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AUAAUUGGAUUU

Length

12 nucleotides

Bulged bases

7PIB|1|3|U|1481, 7PIB|1|3|U|1482, 7PIB|1|3|U|1486

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIB_036 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.132

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7PIB|1|3|A|1477
7PIB|1|3|U|1478
7PIB|1|3|A|1479
7PIB|1|3|A|1480
7PIB|1|3|U|1481
7PIB|1|3|U|1482
7PIB|1|3|G|1483
7PIB|1|3|G|1484
7PIB|1|3|A|1485
7PIB|1|3|U|1486
7PIB|1|3|U|1487
7PIB|1|3|U|1488

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain m

50S ribosomal protein L17