HL_7PIB_041

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAGAGGAUC

Length

9 nucleotides

Bulged bases

7PIB|1|3|G|1668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIB_041 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.5418

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7PIB|1|3|G|1663
7PIB|1|3|A|1664
7PIB|1|3|G|1665
7PIB|1|3|A|1666
7PIB|1|3|G|1667
7PIB|1|3|G|1668
7PIB|1|3|A|1669
7PIB|1|3|U|1670
7PIB|1|3|C|1671

Current chains

Chain 3

23S ribosomal RNA

Nearby chains