HL_7PIB_043

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGUAAAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIB_043 not in the Motif Atlas

Geometric match to HL_5J7L_154

Geometric discrepancy: 0.3972

The information below is about HL_5J7L_154

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7PIB|1|3|U|1746
7PIB|1|3|G|1747
7PIB|1|3|U|1748
7PIB|1|3|A|1749
7PIB|1|3|A|1750
7PIB|1|3|A|1751
7PIB|1|3|A|1752
7PIB|1|3|G|1753

Current chains

Chain 3

23S ribosomal RNA

Nearby chains