HL_7PIB_050

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUGAAGACAC

Length

10 nucleotides

Bulged bases

7PIB|1|3|A|2037, 7PIB|1|3|A|2038, 7PIB|1|3|G|2039

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIB_050 not in the Motif Atlas

Geometric match to HL_4WF9_047

Geometric discrepancy: 0.2095

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

7PIB|1|3|G|2034
7PIB|1|3|U|2035
7PIB|1|3|G|2036
7PIB|1|3|A|2037
7PIB|1|3|A|2038
7PIB|1|3|G|2039
7PIB|1|3|A|2040
7PIB|1|3|C|2041
7PIB|1|3|A|2042
7PIB|1|3|C|2043

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L3