HL_7PIB_058

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIB_058 not in the Motif Atlas

Geometric match to HL_6UFH_002

Geometric discrepancy: 0.122

The information below is about HL_6UFH_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

7PIB|1|3|A|2382
7PIB|1|3|G|2383
7PIB|1|3|A|2384
7PIB|1|3|A|2385
7PIB|1|3|A|2386
7PIB|1|3|U|2387

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain n

50S ribosomal protein L18