HL_7PIB_059

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AGUAUGGAAU

Length

10 nucleotides

Bulged bases

7PIB|1|3|U|2414

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIB_059 not in the Motif Atlas

Geometric match to HL_7RQB_059

Geometric discrepancy: 0.2006

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

7PIB|1|3|A|2412
7PIB|1|3|G|2413
7PIB|1|3|U|2414
7PIB|1|3|A|2415
7PIB|1|3|U|2416
7PIB|1|3|G|2417
7PIB|1|3|G|2418
7PIB|1|3|A|2419
7PIB|1|3|A|2420
7PIB|1|3|U|2421

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain k

50S ribosomal protein L15