HL_7PIB_074

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGUUCGAAUC

Length

10 nucleotides

Bulged bases

7PIB|1|5|C|180

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIB_074 not in the Motif Atlas

Homologous match to HL_4LFB_004

Geometric discrepancy: 0.426

The information below is about HL_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

7PIB|1|5|G|176
7PIB|1|5|G|177
7PIB|1|5|U|178
7PIB|1|5|U|179
7PIB|1|5|C|180
7PIB|1|5|G|185
7PIB|1|5|A|186
7PIB|1|5|A|187
7PIB|1|5|U|188
7PIB|1|5|C|189

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S17