HL_7PIB_100

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAUUAG

Length

6 nucleotides

Bulged bases

7PIB|1|5|U|1426

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIB_100 not in the Motif Atlas

Homologous match to HL_5J7L_030

Geometric discrepancy: 0.2436

The information below is about HL_5J7L_030

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7PIB|1|5|C|1424
7PIB|1|5|A|1425
7PIB|1|5|U|1426
7PIB|1|5|U|1427
7PIB|1|5|A|1428
7PIB|1|5|G|1429

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain S

30S ribosomal protein S20