HL_7PIR_013

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

AGACCAUU

Length

8 nucleotides

Bulged bases

7PIR|1|3|G|447

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIR_013 not in the Motif Atlas

Geometric match to HL_5J7L_198

Geometric discrepancy: 0.2888

The information below is about HL_5J7L_198

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7PIR|1|3|A|446
7PIR|1|3|G|447
7PIR|1|3|A|448
7PIR|1|3|C|449
7PIR|1|3|C|450
7PIR|1|3|A|451
7PIR|1|3|U|452
7PIR|1|3|U|453

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain k

50S ribosomal protein L15