7PIR Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7PIR_001 | No text annotation | ||
| HL_7PIR_107 | No text annotation | ||
| HL_7PIR_002 | No text annotation | ||
| HL_7PIR_003 | No text annotation | ||
| HL_7PIR_004 | GNRA | ||
| HL_7PIR_005 | No text annotation | ||
| HL_7PIR_006 | No text annotation | ||
| HL_7PIR_007 | No text annotation | ||
| HL_7PIR_008 | No text annotation | ||
| HL_7PIR_108 | No text annotation | ||
| HL_7PIR_009 | No text annotation | ||
| HL_7PIR_010 | tRNA D-loop | ||
| HL_7PIR_109 | T-loop with 1 bulged base | ||
| HL_7PIR_011 | T-loop with unstacked turn | ||
| HL_7PIR_110 | No text annotation | ||
| HL_7PIR_012 | No text annotation | ||
| HL_7PIR_013 | Ribsomal LSU H95 | ||
| HL_7PIR_014 | No text annotation | ||
| HL_7PIR_015 | GNRA | ||
| HL_7PIR_016 | No text annotation | ||
| HL_7PIR_017 | T-loop with 2 stacked bulged bases | ||
| HL_7PIR_018 | GNRA related | ||
| HL_7PIR_019 | GNRA | ||
| HL_7PIR_020 | GNRA with extra cWW | ||
| HL_7PIR_021 | GNRA wlth tandem sheared | ||
| HL_7PIR_022 | No text annotation | ||
| HL_7PIR_023 | No text annotation | ||
| HL_7PIR_024 | No text annotation | ||
| HL_7PIR_025 | No text annotation | ||
| HL_7PIR_026 | GNRA | ||
| HL_7PIR_027 | No text annotation | ||
| HL_7PIR_028 | No text annotation | ||
| HL_7PIR_029 | No text annotation | ||
| HL_7PIR_030 | No text annotation | ||
| HL_7PIR_031 | No text annotation | ||
| HL_7PIR_032 | T-loop with 2 stacked bulged bases | ||
| HL_7PIR_033 | Pseudoknot geometry with 3' bulge | ||
| HL_7PIR_034 | No text annotation | ||
| HL_7PIR_035 | No text annotation | ||
| HL_7PIR_036 | tRNA D-loop | ||
| HL_7PIR_037 | Pseudoknot geometry with 3' bulge | ||
| HL_7PIR_038 | No text annotation | ||
| HL_7PIR_039 | Mini UNCG | ||
| HL_7PIR_040 | No text annotation | ||
| HL_7PIR_041 | No text annotation | ||
| HL_7PIR_042 | UNCG | ||
| HL_7PIR_043 | tRNA anticodon loop | ||
| HL_7PIR_044 | No text annotation | ||
| HL_7PIR_045 | No text annotation | ||
| HL_7PIR_046 | UNCG variation | ||
| HL_7PIR_047 | GNRA | ||
| HL_7PIR_048 | No text annotation | ||
| HL_7PIR_049 | No text annotation | ||
| HL_7PIR_111 | Mini UNCG | ||
| HL_7PIR_050 | No text annotation | ||
| HL_7PIR_051 | No text annotation | ||
| HL_7PIR_052 | No text annotation | ||
| HL_7PIR_112 | No text annotation | ||
| HL_7PIR_053 | No text annotation | ||
| HL_7PIR_118 | No text annotation | ||
| HL_7PIR_054 | No text annotation | ||
| HL_7PIR_055 | No text annotation | ||
| HL_7PIR_056 | GNRA with extra cWW | ||
| HL_7PIR_057 | GNRA | ||
| HL_7PIR_058 | No text annotation | ||
| HL_7PIR_059 | No text annotation | ||
| HL_7PIR_060 | No text annotation | ||
| HL_7PIR_113 | GNRA variation | ||
| HL_7PIR_061 | No text annotation | ||
| HL_7PIR_062 | No text annotation | ||
| HL_7PIR_063 | No text annotation | ||
| HL_7PIR_064 | No text annotation | ||
| HL_7PIR_065 | No text annotation | ||
| HL_7PIR_066 | No text annotation | ||
| HL_7PIR_067 | GNRA | ||
| HL_7PIR_114 | No text annotation | ||
| HL_7PIR_068 | No text annotation | ||
| HL_7PIR_069 | No text annotation | ||
| HL_7PIR_070 | No text annotation | ||
| HL_7PIR_071 | GNRA | ||
| HL_7PIR_072 | GNRA | ||
| HL_7PIR_073 | No text annotation | ||
| HL_7PIR_074 | GNRA wlth tandem sheared | ||
| HL_7PIR_115 | No text annotation | ||
| HL_7PIR_075 | GNRA related | ||
| HL_7PIR_076 | GNRA | ||
| HL_7PIR_077 | No text annotation | ||
| HL_7PIR_078 | UNCG | ||
| HL_7PIR_079 | GNRA | ||
| HL_7PIR_080 | No text annotation | ||
| HL_7PIR_081 | No text annotation | ||
| HL_7PIR_082 | GNRA | ||
| HL_7PIR_083 | No text annotation | ||
| HL_7PIR_084 | No text annotation | ||
| HL_7PIR_085 | GNRA | ||
| HL_7PIR_086 | No text annotation | ||
| HL_7PIR_087 | Mini UNCG | ||
| HL_7PIR_088 | GNRA | ||
| HL_7PIR_089 | GNRA | ||
| HL_7PIR_090 | No text annotation | ||
| HL_7PIR_091 | GNRA | ||
| HL_7PIR_092 | GNRA | ||
| HL_7PIR_116 | No text annotation | ||
| HL_7PIR_093 | T-loop related | ||
| HL_7PIR_117 | No text annotation | ||
| HL_7PIR_094 | No text annotation | ||
| HL_7PIR_095 | No text annotation | ||
| HL_7PIR_119 | No text annotation | ||
| HL_7PIR_096 | GNRA | ||
| HL_7PIR_097 | T-loop with 2 stacked bulged bases | ||
| HL_7PIR_098 | No text annotation | ||
| HL_7PIR_099 | UNCG | ||
| HL_7PIR_100 | GNRA | ||
| HL_7PIR_101 | tRNA D-loop | ||
| HL_7PIR_102 | No text annotation | ||
| HL_7PIR_103 | T-loop with 2 stacked bulged bases | ||
| HL_7PIR_104 | tRNA D-loop | ||
| HL_7PIR_105 | No text annotation | ||
| HL_7PIR_106 | T-loop with 2 stacked bulged bases |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7PIR_001 | Isolated non-canonical cWW pair | ||
| IL_7PIR_002 | Triple sheared with non-canonical cWW | ||
| IL_7PIR_003 | Single bulged A | ||
| IL_7PIR_004 | Minor groove platform | ||
| IL_7PIR_005 | Kink-turn | ||
| IL_7PIR_006 | No text annotation | ||
| IL_7PIR_007 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_7PIR_008 | Single stack bend | ||
| IL_7PIR_009 | 7x6 Sarcin-Ricin with UU cWW pair; G-bulge | ||
| IL_7PIR_010 | No text annotation | ||
| IL_7PIR_011 | No text annotation | ||
| IL_7PIR_012 | Tandem non-canonical cWW pairs | ||
| IL_7PIR_013 | No text annotation | ||
| IL_7PIR_014 | Minor groove platform | ||
| IL_7PIR_015 | No text annotation | ||
| IL_7PIR_016 | Double sheared | ||
| IL_7PIR_169 | No text annotation | ||
| IL_7PIR_017 | No text annotation | ||
| IL_7PIR_018 | Isolated non-canonical cWW pair | ||
| IL_7PIR_019 | tHW-tHW cross-strand stack | ||
| IL_7PIR_020 | Single bulged A | ||
| IL_7PIR_170 | Single bulged G | ||
| IL_7PIR_021 | No text annotation | ||
| IL_7PIR_171 | Triple sheared | ||
| IL_7PIR_022 | Major groove platform | ||
| IL_7PIR_023 | Isolated non-canonical cWW pair | ||
| IL_7PIR_024 | Multiple bulged bases | ||
| IL_7PIR_025 | No text annotation | ||
| IL_7PIR_207 | No text annotation | ||
| IL_7PIR_026 | No text annotation | ||
| IL_7PIR_208 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_7PIR_209 | No text annotation | ||
| IL_7PIR_027 | No text annotation | ||
| IL_7PIR_028 | Isolated near basepair | ||
| IL_7PIR_172 | No text annotation | ||
| IL_7PIR_029 | No text annotation | ||
| IL_7PIR_210 | No text annotation | ||
| IL_7PIR_173 | No text annotation | ||
| IL_7PIR_030 | Single stack bend | ||
| IL_7PIR_031 | Isolated cWS basepair | ||
| IL_7PIR_032 | UAA/GAN | ||
| IL_7PIR_033 | Multiple bulged bases | ||
| IL_7PIR_034 | Kink-turn related | ||
| IL_7PIR_035 | No text annotation | ||
| IL_7PIR_036 | Isolated cWS basepair | ||
| IL_7PIR_037 | No text annotation | ||
| IL_7PIR_038 | No text annotation | ||
| IL_7PIR_039 | Major groove platform with extra cWW | ||
| IL_7PIR_040 | Single stack bend | ||
| IL_7PIR_041 | Isolated cWS basepair | ||
| IL_7PIR_174 | Isolated non-canonical cWW pair | ||
| IL_7PIR_042 | Kink-turn | ||
| IL_7PIR_043 | Intercalated cWW | ||
| IL_7PIR_044 | Major groove platform; stack outside cWW | ||
| IL_7PIR_045 | C-loop | ||
| IL_7PIR_046 | UAA/GAN | ||
| IL_7PIR_047 | tSH-tHW-tHS | ||
| IL_7PIR_048 | No text annotation | ||
| IL_7PIR_049 | No text annotation | ||
| IL_7PIR_175 | No text annotation | ||
| IL_7PIR_211 | No text annotation | ||
| IL_7PIR_176 | No text annotation | ||
| IL_7PIR_212 | No text annotation | ||
| IL_7PIR_177 | No text annotation | ||
| IL_7PIR_050 | Non canonical cWW and near pair | ||
| IL_7PIR_051 | No text annotation | ||
| IL_7PIR_052 | Double sheared | ||
| IL_7PIR_053 | No text annotation | ||
| IL_7PIR_054 | No text annotation | ||
| IL_7PIR_178 | No text annotation | ||
| IL_7PIR_055 | Isolated non-canonical cWW with bulges | ||
| IL_7PIR_179 | Single bulged A | ||
| IL_7PIR_056 | Single stack bend | ||
| IL_7PIR_057 | No text annotation | ||
| IL_7PIR_058 | No text annotation | ||
| IL_7PIR_059 | Major groove platform; stack outside cWW | ||
| IL_7PIR_060 | tSH-tSH-tHH-tHS | ||
| IL_7PIR_061 | Single bulged A | ||
| IL_7PIR_062 | Kink-turn related | ||
| IL_7PIR_063 | Minor groove platform, major groove intercalation | ||
| IL_7PIR_180 | Major groove intercalation | ||
| IL_7PIR_064 | No text annotation | ||
| IL_7PIR_065 | Major groove minor groove platform; mini C-loop | ||
| IL_7PIR_066 | No text annotation | ||
| IL_7PIR_067 | No text annotation | ||
| IL_7PIR_068 | Single stack bend | ||
| IL_7PIR_069 | UAA/GAN variation | ||
| IL_7PIR_070 | Multiple bulged bases | ||
| IL_7PIR_071 | No text annotation | ||
| IL_7PIR_181 | No text annotation | ||
| IL_7PIR_072 | Isolated non-canonical cWW pair | ||
| IL_7PIR_073 | No text annotation | ||
| IL_7PIR_074 | No text annotation | ||
| IL_7PIR_075 | Single bulged U | ||
| IL_7PIR_076 | Minor groove platform | ||
| IL_7PIR_182 | Isolated tHS basepair with bulges | ||
| IL_7PIR_077 | No text annotation | ||
| IL_7PIR_078 | Isolated non-canonical cWW pair | ||
| IL_7PIR_079 | No text annotation | ||
| IL_7PIR_080 | Single stack bend | ||
| IL_7PIR_081 | No text annotation | ||
| IL_7PIR_183 | No text annotation | ||
| IL_7PIR_082 | No text annotation | ||
| IL_7PIR_083 | Multiple bulged bases | ||
| IL_7PIR_084 | No text annotation | ||
| IL_7PIR_184 | No text annotation | ||
| IL_7PIR_085 | No text annotation | ||
| IL_7PIR_086 | Isolated non-canonical cWW pair | ||
| IL_7PIR_087 | No text annotation | ||
| IL_7PIR_213 | No text annotation | ||
| IL_7PIR_185 | No text annotation | ||
| IL_7PIR_088 | No text annotation | ||
| IL_7PIR_186 | No text annotation | ||
| IL_7PIR_089 | Double sheared | ||
| IL_7PIR_090 | No text annotation | ||
| IL_7PIR_091 | Major groove platform | ||
| IL_7PIR_092 | Major groove platform | ||
| IL_7PIR_187 | No text annotation | ||
| IL_7PIR_093 | No text annotation | ||
| IL_7PIR_094 | Double sheared with non-canonical cWW | ||
| IL_7PIR_188 | Major groove platform | ||
| IL_7PIR_095 | No text annotation | ||
| IL_7PIR_096 | Isolated non-canonical cWW with bulges | ||
| IL_7PIR_097 | Multiple bulged bases | ||
| IL_7PIR_189 | No text annotation | ||
| IL_7PIR_098 | Major groove platform with intercalation | ||
| IL_7PIR_099 | No text annotation | ||
| IL_7PIR_100 | No text annotation | ||
| IL_7PIR_101 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_7PIR_102 | C-loop with extra cWW pair | ||
| IL_7PIR_103 | UAA/GAN related, with intercalation | ||
| IL_7PIR_104 | Multiple bulged bases | ||
| IL_7PIR_105 | UAA/GAN with extra cWW | ||
| IL_7PIR_106 | Major groove intercalation | ||
| IL_7PIR_214 | No text annotation | ||
| IL_7PIR_107 | Multiple bulged bases with non-canonical cWW | ||
| IL_7PIR_108 | No text annotation | ||
| IL_7PIR_215 | No text annotation | ||
| IL_7PIR_109 | Isolated non-canonical cWW with bulges | ||
| IL_7PIR_110 | Single stack bend | ||
| IL_7PIR_190 | No text annotation | ||
| IL_7PIR_111 | No text annotation | ||
| IL_7PIR_112 | Major groove minor groove platform; mini C-loop | ||
| IL_7PIR_113 | Symmetric double minor groove platform | ||
| IL_7PIR_114 | Single bulged A | ||
| IL_7PIR_115 | Multiple bulged bases | ||
| IL_7PIR_116 | No text annotation | ||
| IL_7PIR_117 | No text annotation | ||
| IL_7PIR_191 | No text annotation | ||
| IL_7PIR_118 | No text annotation | ||
| IL_7PIR_119 | Isolated cWH basepair | ||
| IL_7PIR_120 | tWH-tWH-tHW-tHW | ||
| IL_7PIR_192 | Isolated non-canonical cWW pair | ||
| IL_7PIR_121 | No text annotation | ||
| IL_7PIR_122 | No text annotation | ||
| IL_7PIR_193 | No text annotation | ||
| IL_7PIR_123 | No text annotation | ||
| IL_7PIR_124 | Single bulged U | ||
| IL_7PIR_125 | C-loop | ||
| IL_7PIR_126 | Isolated non-canonical cWW pair | ||
| IL_7PIR_194 | No text annotation | ||
| IL_7PIR_127 | No text annotation | ||
| IL_7PIR_128 | Major groove minor groove platform with extra cWW | ||
| IL_7PIR_129 | No text annotation | ||
| IL_7PIR_130 | No text annotation | ||
| IL_7PIR_131 | No text annotation | ||
| IL_7PIR_132 | SSU/LSU pseudoknot | ||
| IL_7PIR_133 | Kink-turn related | ||
| IL_7PIR_134 | No text annotation | ||
| IL_7PIR_135 | No text annotation | ||
| IL_7PIR_136 | No text annotation | ||
| IL_7PIR_137 | Minor groove platform | ||
| IL_7PIR_138 | Single stack bend | ||
| IL_7PIR_195 | No text annotation | ||
| IL_7PIR_139 | No text annotation | ||
| IL_7PIR_140 | Major groove platform; stack outside cWW | ||
| IL_7PIR_141 | No text annotation | ||
| IL_7PIR_142 | No text annotation | ||
| IL_7PIR_196 | Tandem non-canonical cWW pairs | ||
| IL_7PIR_197 | Triple non-canonical cWW pairs | ||
| IL_7PIR_143 | No text annotation | ||
| IL_7PIR_144 | Kink-turn | ||
| IL_7PIR_145 | No text annotation | ||
| IL_7PIR_146 | No text annotation | ||
| IL_7PIR_198 | Tandem non-canonical cWW pairs | ||
| IL_7PIR_199 | Isolated non-canonical cWW pair | ||
| IL_7PIR_147 | 10x8 Sarcin-Ricin; G-bulge | ||
| IL_7PIR_148 | No text annotation | ||
| IL_7PIR_200 | No text annotation | ||
| IL_7PIR_149 | Isolated non-canonical cWW pair | ||
| IL_7PIR_201 | Isolated non-canonical cWW pair | ||
| IL_7PIR_150 | Minor groove platform | ||
| IL_7PIR_151 | Single bulged U | ||
| IL_7PIR_152 | No text annotation | ||
| IL_7PIR_216 | Minor groove platform | ||
| IL_7PIR_153 | No text annotation | ||
| IL_7PIR_154 | Single bulged A | ||
| IL_7PIR_155 | Isolated non-canonical cWW pair | ||
| IL_7PIR_202 | No text annotation | ||
| IL_7PIR_156 | 180 degree turn | ||
| IL_7PIR_203 | Double sheared | ||
| IL_7PIR_157 | Double sheared with non-canonical cWW | ||
| IL_7PIR_158 | No text annotation | ||
| IL_7PIR_159 | No text annotation | ||
| IL_7PIR_160 | No text annotation | ||
| IL_7PIR_161 | Isolated non-canonical cWW pair | ||
| IL_7PIR_162 | Isolated cWH basepair | ||
| IL_7PIR_204 | Tandem non-canonical cWW pairs | ||
| IL_7PIR_163 | Isolated non-canonical cWW pair | ||
| IL_7PIR_217 | No text annotation | ||
| IL_7PIR_164 | No text annotation | ||
| IL_7PIR_165 | Tandem non-canonical cWW pairs | ||
| IL_7PIR_205 | No text annotation | ||
| IL_7PIR_218 | No text annotation | ||
| IL_7PIR_166 | No text annotation | ||
| IL_7PIR_206 | Isolated non-canonical cWW with bulges | ||
| IL_7PIR_167 | Single stack bend | ||
| IL_7PIR_168 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7PIR_001 | No text annotation | ||
| J3_7PIR_023 | No text annotation | ||
| J3_7PIR_024 | No text annotation | ||
| J3_7PIR_002 | No text annotation | ||
| J3_7PIR_003 | No text annotation | ||
| J3_7PIR_025 | No text annotation | ||
| J3_7PIR_004 | No text annotation | ||
| J3_7PIR_005 | No text annotation | ||
| J3_7PIR_006 | No text annotation | ||
| J3_7PIR_007 | No text annotation | ||
| J3_7PIR_026 | No text annotation | ||
| J3_7PIR_008 | No text annotation | ||
| J3_7PIR_027 | No text annotation | ||
| J3_7PIR_009 | No text annotation | ||
| J3_7PIR_028 | No text annotation | ||
| J3_7PIR_034 | No text annotation | ||
| J3_7PIR_010 | No text annotation | ||
| J3_7PIR_029 | No text annotation | ||
| J3_7PIR_011 | No text annotation | ||
| J3_7PIR_012 | No text annotation | ||
| J3_7PIR_013 | No text annotation | ||
| J3_7PIR_014 | No text annotation | ||
| J3_7PIR_015 | No text annotation | ||
| J3_7PIR_030 | No text annotation | ||
| J3_7PIR_016 | No text annotation | ||
| J3_7PIR_017 | No text annotation | ||
| J3_7PIR_031 | No text annotation | ||
| J3_7PIR_018 | No text annotation | ||
| J3_7PIR_032 | No text annotation | ||
| J3_7PIR_019 | No text annotation | ||
| J3_7PIR_033 | No text annotation | ||
| J3_7PIR_020 | No text annotation | ||
| J3_7PIR_021 | No text annotation | ||
| J3_7PIR_022 | No text annotation | ||
| J4_7PIR_016 | No text annotation | ||
| J4_7PIR_001 | No text annotation | ||
| J4_7PIR_002 | No text annotation | ||
| J4_7PIR_003 | No text annotation | ||
| J4_7PIR_004 | No text annotation | ||
| J4_7PIR_017 | No text annotation | ||
| J4_7PIR_005 | No text annotation | ||
| J4_7PIR_006 | No text annotation | ||
| J4_7PIR_007 | No text annotation | ||
| J4_7PIR_018 | No text annotation | ||
| J4_7PIR_008 | No text annotation | ||
| J4_7PIR_019 | No text annotation | ||
| J4_7PIR_009 | No text annotation | ||
| J4_7PIR_010 | No text annotation | ||
| J4_7PIR_011 | No text annotation | ||
| J4_7PIR_012 | No text annotation | ||
| J4_7PIR_013 | No text annotation | ||
| J4_7PIR_014 | No text annotation | ||
| J4_7PIR_015 | No text annotation | ||
| J5_7PIR_001 | No text annotation | ||
| J5_7PIR_002 | No text annotation | ||
| J5_7PIR_003 | No text annotation | ||
| J5_7PIR_004 | No text annotation | ||
| J5_7PIR_005 | No text annotation | ||
| J5_7PIR_006 | No text annotation | ||
| J5_7PIR_010 | No text annotation | ||
| J5_7PIR_011 | No text annotation | ||
| J5_7PIR_007 | No text annotation | ||
| J5_7PIR_008 | No text annotation | ||
| J5_7PIR_012 | No text annotation | ||
| J5_7PIR_009 | No text annotation | ||
| J6_7PIR_001 | No text annotation | ||
| J7_7PIR_001 | No text annotation | ||
| J7_7PIR_002 | No text annotation | ||
| J7_7PIR_003 | No text annotation |
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