HL_7PIR_017
3D structure
- PDB id
- 7PIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.1 Å
Loop
- Sequence
- UUUUGAAGUA
- Length
- 10 nucleotides
- Bulged bases
- 7PIR|1|3|U|607
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7PIR_017 not in the Motif Atlas
- Homologous match to HL_8VTW_017
- Geometric discrepancy: 0.5052
- The information below is about HL_8VTW_017
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
7PIR|1|3|U|599
7PIR|1|3|U|600
7PIR|1|3|U|601
7PIR|1|3|U|602
7PIR|1|3|G|603
7PIR|1|3|A|604
7PIR|1|3|A|605
7PIR|1|3|G|606
7PIR|1|3|U|607
7PIR|1|3|A|608
Current chains
- Chain 3
- 23S ribosomal RNA
Nearby chains
- Chain b
- 50S ribosomal protein L3
- Chain k
- 50S ribosomal protein L15
- Chain p
- 50S ribosomal protein L20
- Chain q
- 50S ribosomal protein L21
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