HL_7PIR_028

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIR_028 not in the Motif Atlas

Geometric match to HL_8G9Z_001

Geometric discrepancy: 0.1435

The information below is about HL_8G9Z_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

7PIR|1|3|C|1099
7PIR|1|3|U|1100
7PIR|1|3|U|1101
7PIR|1|3|A|1102
7PIR|1|3|G|1103
7PIR|1|3|A|1104
7PIR|1|3|A|1105
7PIR|1|3|G|1106
7PIR|1|3|C|1107
7PIR|1|3|A|1108
7PIR|1|3|G|1109

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain h

50S ribosomal protein L11