HL_7PIR_035

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

7PIR|1|3|U|1424, 7PIR|1|3|U|1425

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIR_035 not in the Motif Atlas

Homologous match to HL_7A0S_035

Geometric discrepancy: 0.5342

The information below is about HL_7A0S_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7PIR|1|3|G|1417
7PIR|1|3|U|1418
7PIR|1|3|U|1419
7PIR|1|3|A|1420
7PIR|1|3|A|1421
7PIR|1|3|U|1422
7PIR|1|3|A|1423
7PIR|1|3|U|1424
7PIR|1|3|U|1425
7PIR|1|3|C|1426

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain s

50S ribosomal protein L23