HL_7PIR_040

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GAACACAC

Length

8 nucleotides

Bulged bases

7PIR|1|3|A|1648, 7PIR|1|3|A|1650, 7PIR|1|3|A|1652

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIR_040 not in the Motif Atlas

Geometric match to HL_4V9F_011

Geometric discrepancy: 0.1591

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

7PIR|1|3|G|1646
7PIR|1|3|A|1647
7PIR|1|3|A|1648
7PIR|1|3|C|1649
7PIR|1|3|A|1650
7PIR|1|3|C|1651
7PIR|1|3|A|1652
7PIR|1|3|C|1653

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34

Chain m

50S ribosomal protein L17

Chain r

50S ribosomal protein L22