HL_7PIR_043

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

AUGUAAAAGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIR_043 not in the Motif Atlas

Geometric match to HL_3W3S_002

Geometric discrepancy: 0.3037

The information below is about HL_3W3S_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

43

Unit IDs

7PIR|1|3|A|1745
7PIR|1|3|U|1746
7PIR|1|3|G|1747
7PIR|1|3|U|1748
7PIR|1|3|A|1749
7PIR|1|3|A|1750
7PIR|1|3|A|1751
7PIR|1|3|A|1752
7PIR|1|3|G|1753
7PIR|1|3|U|1754

Current chains

Chain 3

23S ribosomal RNA

Nearby chains