HL_7PIR_050

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GUGAAGACAC

Length

10 nucleotides

Bulged bases

7PIR|1|3|A|2037, 7PIR|1|3|A|2038, 7PIR|1|3|G|2039

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIR_050 not in the Motif Atlas

Geometric match to HL_4WF9_047

Geometric discrepancy: 0.3577

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

7PIR|1|3|G|2034
7PIR|1|3|U|2035
7PIR|1|3|G|2036
7PIR|1|3|A|2037
7PIR|1|3|A|2038
7PIR|1|3|G|2039
7PIR|1|3|A|2040
7PIR|1|3|C|2041
7PIR|1|3|A|2042
7PIR|1|3|C|2043

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L3

Chain p

50S ribosomal protein L20

Chain y

50S ribosomal protein L32