HL_7PIR_063

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

7PIR|1|3|A|2668

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIR_063 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.2628

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

7PIR|1|3|C|2666
7PIR|1|3|G|2667
7PIR|1|3|A|2668
7PIR|1|3|G|2669
7PIR|1|3|A|2670
7PIR|1|3|G|2671

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L6