HL_7PIR_076

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

UGAGAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIR_076 not in the Motif Atlas

Homologous match to HL_6CZR_078

Geometric discrepancy: 0.4501

The information below is about HL_6CZR_078

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7PIR|1|5|U|292
7PIR|1|5|G|293
7PIR|1|5|A|294
7PIR|1|5|G|295
7PIR|1|5|A|296
7PIR|1|5|A|297

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain C

30S ribosomal protein S4

Chain D

30S ribosomal protein S5

Chain K

30S ribosomal protein S12

Chain P

30S ribosomal protein S17