HL_7PIR_078

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

7PIR|1|5|A|340

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIR_078 not in the Motif Atlas

Homologous match to HL_6CZR_080

Geometric discrepancy: 0.2977

The information below is about HL_6CZR_080

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

58

Unit IDs

7PIR|1|5|C|338
7PIR|1|5|U|339
7PIR|1|5|A|340
7PIR|1|5|C|341
7PIR|1|5|G|342
7PIR|1|5|G|343

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain j

50S ribosomal protein L14

Chain o

50S ribosomal protein L19