HL_7PIR_087

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GCGAUCCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIR_087 not in the Motif Atlas

Homologous match to HL_6CZR_089

Geometric discrepancy: 0.5684

The information below is about HL_6CZR_089

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.1

Basepair signature

cWW-F

Number of instances in this motif group

51

Unit IDs

7PIR|1|5|G|835
7PIR|1|5|C|836
7PIR|1|5|G|837
7PIR|1|5|A|838
7PIR|1|5|U|839
7PIR|1|5|C|840
7PIR|1|5|C|841
7PIR|1|5|C|842

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain A

30S ribosomal protein S2

Chain E

30S ribosomal protein S6

Chain Q

30S ribosomal protein S18