HL_7PIR_101

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

7PIR|1|6|C|18, 7PIR|1|6|G|19

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIR_101 not in the Motif Atlas

Geometric match to HL_6JXM_001

Geometric discrepancy: 0.3201

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

7PIR|1|6|C|14
7PIR|1|6|A|15
7PIR|1|6|G|16
7PIR|1|6|U|17
7PIR|1|6|C|18
7PIR|1|6|G|19
7PIR|1|6|G|20
7PIR|1|6|U|21
7PIR|1|6|A|22
7PIR|1|6|G|23

Current chains

Chain 6

tRNA-Phe

Nearby chains

Chain 3

Large subunit ribosomal RNA; LSU rRNA

Chain l

50S ribosomal protein L16