HL_7PJS_028

3D structure

PDB id

7PJS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PJS_028 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.323

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7PJS|1|A|C|1092
7PJS|1|A|G|1093
7PJS|1|A|U|1094
7PJS|1|A|A|1095
7PJS|1|A|A|1096
7PJS|1|A|U|1097
7PJS|1|A|A|1098
7PJS|1|A|G|1099

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L10

Chain G

50S ribosomal protein L6

Chain I

50S ribosomal protein L11