HL_7PJS_035

3D structure

PDB id

7PJS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

7PJS|1|A|A|1453, 7PJS|1|A|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PJS_035 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.0929

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7PJS|1|A|C|1451
7PJS|1|A|G|1452
7PJS|1|A|A|1453
7PJS|1|A|C|1454
7PJS|1|A|G|1455
7PJS|1|A|G|1456
7PJS|1|A|U|1457
7PJS|1|A|U|1458
7PJS|1|A|G|1459

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17