3D structure

PDB id
7PJS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.35 Å

Loop

Sequence
CGCAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7PJS_046 not in the Motif Atlas
Geometric match to HL_4QLM_001
Geometric discrepancy: 0.1379
The information below is about HL_4QLM_001
Detailed Annotation
GNRA
Broad Annotation
GNRA
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

7PJS|1|A|C|1868
7PJS|1|A|G|1869
7PJS|1|A|C|1870
7PJS|1|A|A|1871
7PJS|1|A|A|1872
7PJS|1|A|G|1873

Current chains

Chain A
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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