HL_7PJS_065

3D structure

PDB id

7PJS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7PJS|1|A|G|2751, 7PJS|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PJS_065 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0568

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7PJS|1|A|C|2745
7PJS|1|A|U|2746
7PJS|1|A|G|2747
7PJS|1|A|A|2748
7PJS|1|A|A|2749
7PJS|1|A|A|2750
7PJS|1|A|G|2751
7PJS|1|A|C|2752
7PJS|1|A|A|2753
7PJS|1|A|U|2754
7PJS|1|A|C|2755
7PJS|1|A|U|2756
7PJS|1|A|A|2757
7PJS|1|A|A|2758
7PJS|1|A|G|2759

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13