HL_7PJS_076

3D structure

PDB id

7PJS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

7PJS|1|a|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PJS_076 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.0697

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7PJS|1|a|G|259
7PJS|1|a|G|260
7PJS|1|a|U|261
7PJS|1|a|A|262
7PJS|1|a|A|263
7PJS|1|a|C|264
7PJS|1|a|G|265
7PJS|1|a|G|266
7PJS|1|a|C|267

Current chains

Chain a

16S ribosomal RNA

Nearby chains