HL_7PJS_078

3D structure

PDB id

7PJS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PJS_078 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0746

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7PJS|1|a|A|320
7PJS|1|a|A|321
7PJS|1|a|C|322
7PJS|1|a|U|323
7PJS|1|a|G|324
7PJS|1|a|A|325
7PJS|1|a|G|326
7PJS|1|a|A|327
7PJS|1|a|C|328
7PJS|1|a|A|329
7PJS|1|a|C|330
7PJS|1|a|G|331
7PJS|1|a|G|332
7PJS|1|a|U|333

Current chains

Chain a

16S ribosomal RNA

Nearby chains