HL_7PJT_073

3D structure

PDB id

7PJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in hybrid state 1 (H1)

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

7PJT|1|a|A|160

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PJT_073 not in the Motif Atlas

Homologous match to HL_5J7L_003

Geometric discrepancy: 0.5384

The information below is about HL_5J7L_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7PJT|1|a|G|158
7PJT|1|a|G|159
7PJT|1|a|A|160
7PJT|1|a|A|161
7PJT|1|a|A|162
7PJT|1|a|C|163

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L19

Chain t

30S ribosomal protein S20