HL_7PJU_009

3D structure

PDB id

7PJU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in hybrid state 2 (H2)

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

7PJU|1|A|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PJU_009 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1094

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

22

Unit IDs

7PJU|1|A|C|305
7PJU|1|A|U|306
7PJU|1|A|G|307
7PJU|1|A|G|308
7PJU|1|A|A|309
7PJU|1|A|A|310
7PJU|1|A|A|311
7PJU|1|A|G|312

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

Ribosomal protein L24